Asyr020072.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000315.1:119776-129960[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0011 0.088 13.7 4.1 1 23 361 383 361 383 0.99 2 10 0.0053 0.44 11.5 0.3 1 23 390 412 390 412 0.94 3 10 3.2 2.7e+02 2.8 0.3 1 21 416 435 416 436 0.89 4 10 0.0013 0.11 13.4 6.1 2 23 447 469 446 469 0.96 5 10 3.1e-05 0.0026 18.5 0.1 1 23 478 500 478 500 0.96 6 10 1.7e-05 0.0014 19.4 1.2 1 23 505 527 505 527 0.98 7 10 0.0013 0.11 13.4 1.2 1 21 535 555 535 560 0.92 8 10 0.0004 0.033 15.1 1.1 1 23 565 588 565 588 0.97 9 10 0.0033 0.28 12.2 0.8 2 20 595 613 594 616 0.93 10 10 0.045 3.7 8.6 1.8 3 21 627 645 626 646 0.95
Sequence Information
- Coding Sequence
- ATGTCTTCCTTTCTGTGTTTCGTGTGCCACAGCACAGTAAATGCTGATACAAATGAGGATACACGAGAAAAATATCGGGAAGTTATTGGAATGCACCTATGCCCTGACTCTCACCTGTGTTTCATCTGTTGCTATTTCCTCAACAAAATGTGTCTCTTCAAGTCCATATGCCTCAAAAGGAGTCTGGAGTATCCTGTGCTATTTAGTGAAAAGGGTACAATAAATTTGCAAAGAAGTGACCTCACAGTGGCCATATTATGCCCTGAAGACATATGCCTCCAGCATATAAATACTAGATATCATTTCTACAATAATAGTGATAATTCACAGTCAGATTTTGATGAAAGCAACTACTGTGAGCTGCAAGATGAAAGAAACTTTGATATTAATGACAGTTTGCTGAAAACTGATCAGAATGAGGGGTTCCATAGCGAAGACTTCCTGTTTTCTACTAAAGACAATATTGAAGATAGTTTATTTAATGAAGAGCTGTGTCTTCCTAATTTAGAACCCGTCAGAATTACCCAAAACGATTTAGTCAATGGTGAATGGACTAAAAATGATGTACGCAAAAAAAGGAATGATACAATATTACTTGAGTTAGAGACTTGTAGGAGCAACGCAAATTTTGAAGAAAATGTAATAAATGAGTGTACAGAATCCCAGAAAATAGAAGGTAATTTAAATTTAACCATAGATCAGAATGTGTGTGAAAGTATACCACTAATAAATAATATGAAGGAAAACGAAGAACATTTTATTCAAAATATTAAAAATGATATCATTCAAAACATAGCTACAGACAGTAGTCTTGAAAAAAATATAGAAAATGAAATGTGTGAAAATTTGGAAATAGATGAGCCAATAAATATCAATAGTGAAGAAGACACAACAACTATTGTAGAAATAGAAAATTCATTAGAATCAAAATACACAAATTCAGATCATGATGATTTGTTAGAATCATCAAAAAGCCCGAAAAGAAGGAAAAAGGATTTTAAAAAGATTAAATTGAGTGTTAAAGAACAGAAGATGGAGCTAGAACAGGGGAGAAGAGATGAGAAGTATATAGCAGCGGGTTTCAAATGTTACAATTGTGGAATATATTTTCATTTTAAGGACTCTTATCAAGCCCATATGATGAGGCATGAAGAATCAAACGGCGAATATTGTTGTTCGATCTGCTCGCTTCGCTTCGCCAACCCGGCGGTGCTTCGCTCGCACGCCGCCAATCACGCGGAGCGCTACCGGTGTACACGGTGCCGTACGGTGGTGCGGGCGAGACAGAGACAGACGCATCTGAGAGCGTGCACTGGGAAAGGGACAGTTCCCAGTGTAACTTGTCACCTGTGTGGGAATGTATTTCACACAGCCAGCCATTTCCAACAACACCTGAAGCGATTTCATCAAAGCAAGTCTAGCAATAGAAGCTACCTGTGCAATGTGTGTGGAGCGAGCTTTAACAATAGAGCGGCGGTTAGGACTCATATGATCACCCATATAAACAGAACATTCTCTTGTGACCAATGCCCTGCGACGTTCAGCAGCCCCTACACGTTGAATCAACACAAGAAGAAGCATTCAAATATTGAACAAGAGCTGCACTTCTGTCCCACTTGTAAAGTCGGATTCAGTACAAGGAAAAGTCTCTTAGCCCATAGAAGGAACACTTTGGCACATAAGGATACTGTGTACAAGTGTCCGGTGTGCTCTCGCACATGCCCGTCGGTCCGCTCGCTTCGCTCCCACACGGCCACCGTGCACGCTCGGACCAACCATCTCGTCTGCGCTCTTTGCCAAGCTACGTACTCCACTCGTAAGGCGTTAACGAGGCATATGGCGTGCCACAAGAGTGACTTACCGAAGAAAATGCCGCTTTGTCACTCTTGCGGGGAAACATTTAAGAGTACCAGCATATTTAAGAAACATTTGAAGAATGTGTGCGAAAAGGACAAAACAGATGAAATCCCTTACTATGAATAA
- Protein Sequence
- MSSFLCFVCHSTVNADTNEDTREKYREVIGMHLCPDSHLCFICCYFLNKMCLFKSICLKRSLEYPVLFSEKGTINLQRSDLTVAILCPEDICLQHINTRYHFYNNSDNSQSDFDESNYCELQDERNFDINDSLLKTDQNEGFHSEDFLFSTKDNIEDSLFNEELCLPNLEPVRITQNDLVNGEWTKNDVRKKRNDTILLELETCRSNANFEENVINECTESQKIEGNLNLTIDQNVCESIPLINNMKENEEHFIQNIKNDIIQNIATDSSLEKNIENEMCENLEIDEPININSEEDTTTIVEIENSLESKYTNSDHDDLLESSKSPKRRKKDFKKIKLSVKEQKMELEQGRRDEKYIAAGFKCYNCGIYFHFKDSYQAHMMRHEESNGEYCCSICSLRFANPAVLRSHAANHAERYRCTRCRTVVRARQRQTHLRACTGKGTVPSVTCHLCGNVFHTASHFQQHLKRFHQSKSSNRSYLCNVCGASFNNRAAVRTHMITHINRTFSCDQCPATFSSPYTLNQHKKKHSNIEQELHFCPTCKVGFSTRKSLLAHRRNTLAHKDTVYKCPVCSRTCPSVRSLRSHTATVHARTNHLVCALCQATYSTRKALTRHMACHKSDLPKKMPLCHSCGETFKSTSIFKKHLKNVCEKDKTDEIPYYE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -