Asyr017102.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000237.1:328755-343081[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2.1 1.7e+02 3.4 0.2 2 17 102 117 101 118 0.82 2 12 0.46 38 5.4 2.6 1 23 265 288 265 288 0.96 3 12 0.045 3.7 8.6 0.1 1 23 294 316 294 316 0.98 4 12 0.0055 0.46 11.5 1.5 1 23 320 343 320 343 0.96 5 12 0.15 13 6.9 4.1 1 23 354 376 354 376 0.97 6 12 0.00017 0.014 16.2 0.2 3 23 383 404 382 404 0.96 7 12 0.0013 0.11 13.5 2.0 1 23 411 434 411 434 0.96 8 12 0.00023 0.019 15.8 6.6 1 23 442 464 442 464 0.98 9 12 0.012 1 10.4 0.5 1 23 475 498 475 498 0.93 10 12 7e-06 0.00058 20.6 1.3 1 23 504 527 504 527 0.97 11 12 7e-06 0.00058 20.6 0.2 3 23 538 558 537 558 0.98 12 12 0.0054 0.44 11.5 0.2 2 23 565 587 564 587 0.92
Sequence Information
- Coding Sequence
- ATGATATTGGGACTTCCTCGCTGCTGCAGTGCTTCTGAAATGTTCGCACAGATGCAGACTGATGACTTTTATGCCGTCGTCATGCGCAAGCAGTGCGCATCACTGATAAGAAGGCTGTGGGGAAAATATCATGAATTCAACCTCCGAAGATGTAGCATTACTGGAAATGACACACGTAAACTATCGATAGAGAACGTCTGCTTTTGCTGTTTAGCTAAAAAGGAACCTTTAATCAACCTTGCGAATTGTAAACATAAGGGATATTTACAAGAATATTGTTCGATGGGTTATTCAGAGATATTGGTGTGCTTCATTTGTCACAAAATGTTAAAAAATATAGAGACTTTCAGAAAACAAGTCTATGAATGTCACAGGATGCTCAGCTTTAAAGAAGAGACAGTAGAAAAACCTTCAAATACATTGATGAACCTGCAAATATCTACCACAACTATTACCTCTTTATCCGAAGAAAAACAAATTGATGAACAAAAATGCAATTATATCAAACTCGAAAAAGAACTCATTGAAGATGATTTGAAAACCAACAATCATACACCATGTATAATAAAAACTGATGTCAAAATAGAGTATGATAGTTCTAACTTTGAAAATGATGTTCCAGCACAGAATAAAAAGAAAAAGAAAATTAAACTCAAGTATAAGAAAAAGCTCAAAATGCCTACTGTGGAAGAGAAATTCAATGGAAAGATAAAAGTTGTGGTTTTGACAAAAAGTGAGTTAATGGAGGAACGAGAGAGCGAGTCGAATAAAGAATCATACACAAAGCAACCATATAAATGTGACAGTTGTATAAAAGGATTTGATCATGAGAATACTTATAAAACACACGTTGAAAAACAGCATCAGAAAAAAGGCCCGTACCGTTGCGACATTTGCAACTCCGTGTCCGTATCCGAAGCTGCATACAAGGAACACGGCAAAAAACACTTTAGAAGATACGAATGTATGAGCTGCGGGAAGCGCACTACTGACATATACTCCCTCGCGCAGCATCACAACCAGCAACATGGCGACACTAGCGACGGTATCGACATGCGTTTCAGCTGTGACAAGTGCGATTTTAAATCTATTTCACATAGTGCGTATCGCTACCACCGCGAGAAACACAAGCAGAGCCAAAAGGATTGCAAGATCTGTGGCAGTACTTTTGTTACCACCAACGGCCTCAGGGCTCATATGAATTTGGTCCACAAGAAAATAGACTGCGACTTCAAATGTTCGGATTGCGATAAAGCGTATAAATGCAAGTCCCGCCTGTTGAACCATATAGCGAGCGTGCACCCTCCCACCGACTCGCAGCGCTTCCACTGCGACCAGTGTCGGACGCGCTTCTCCACGAAACTCAACCTCATCCATCATCTCCGCACGCACTCCGCGCATGTCACTGAACAGAGCAAAAAGTATGCATGTCACGAGTGCGACTCCAGATTTCTGACGAGGACCGCCCTTCAGACACACATAGACTGGGAACATCTGAAAGCAGTGAAGTACAAATGCACTAAATGTTCTAAGGTGCTCAAAACGGCAGTGTCGCTGAAGAGACACATCCGGTTTGTTCACGAGAAGAAAAGACCCCCAAAGAACAAGATTTGCGACTACTGTGGAAAAGGATTCACGACAAGTTCAATCCTGGTGTCTCACATCCGTACACACACTGGGGAGCGGCCGCTGCAGTGTGAGAGATGTCCAGCCACCTTTGCACACCCTGCTGCACTCTACAACCATAACAAACTTATTCACAATAAATAG
- Protein Sequence
- MILGLPRCCSASEMFAQMQTDDFYAVVMRKQCASLIRRLWGKYHEFNLRRCSITGNDTRKLSIENVCFCCLAKKEPLINLANCKHKGYLQEYCSMGYSEILVCFICHKMLKNIETFRKQVYECHRMLSFKEETVEKPSNTLMNLQISTTTITSLSEEKQIDEQKCNYIKLEKELIEDDLKTNNHTPCIIKTDVKIEYDSSNFENDVPAQNKKKKKIKLKYKKKLKMPTVEEKFNGKIKVVVLTKSELMEERESESNKESYTKQPYKCDSCIKGFDHENTYKTHVEKQHQKKGPYRCDICNSVSVSEAAYKEHGKKHFRRYECMSCGKRTTDIYSLAQHHNQQHGDTSDGIDMRFSCDKCDFKSISHSAYRYHREKHKQSQKDCKICGSTFVTTNGLRAHMNLVHKKIDCDFKCSDCDKAYKCKSRLLNHIASVHPPTDSQRFHCDQCRTRFSTKLNLIHHLRTHSAHVTEQSKKYACHECDSRFLTRTALQTHIDWEHLKAVKYKCTKCSKVLKTAVSLKRHIRFVHEKKRPPKNKICDYCGKGFTTSSILVSHIRTHTGERPLQCERCPATFAHPAALYNHNKLIHNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -