Basic Information

Insect: Apeira syringaria
Gene Symbol: -
Assembly: GCA_934045895.1
Location: CAKOGY010000022.1:1059477-1069140[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.01 0.86 10.6 1.8 2 23 60 81 59 81 0.96

2 12 0.019 1.6 9.8 0.6 2 23 88 110 87 110 0.93

3 12 0.036 3 8.9 0.1 2 23 118 140 117 140 0.88

4 12 0.0011 0.091 13.7 4.6 1 23 146 168 146 168 0.97

5 12 0.0003 0.025 15.5 3.0 1 23 174 196 174 196 0.93

6 12 0.0013 0.11 13.4 0.1 1 20 202 221 202 223 0.93

7 12 0.09 7.5 7.7 1.3 3 19 243 259 242 264 0.91

8 12 9.7e-06 0.00081 20.1 3.5 1 23 634 656 634 656 0.98

9 12 3.9e-05 0.0032 18.3 4.6 1 23 663 686 663 686 0.97

10 12 0.00038 0.031 15.2 0.8 1 23 694 717 694 717 0.96

11 12 0.13 10 7.2 1.9 3 23 725 747 723 747 0.91

12 12 0.002 0.16 12.9 2.6 1 22 753 774 753 774 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.01	0.86	10.6	1.8	2	23	60	81	59	81	0.96
2	12	0.019	1.6	9.8	0.6	2	23	88	110	87	110	0.93
3	12	0.036	3	8.9	0.1	2	23	118	140	117	140	0.88
4	12	0.0011	0.091	13.7	4.6	1	23	146	168	146	168	0.97
5	12	0.0003	0.025	15.5	3.0	1	23	174	196	174	196	0.93
6	12	0.0013	0.11	13.4	0.1	1	20	202	221	202	223	0.93
7	12	0.09	7.5	7.7	1.3	3	19	243	259	242	264	0.91
8	12	9.7e-06	0.00081	20.1	3.5	1	23	634	656	634	656	0.98
9	12	3.9e-05	0.0032	18.3	4.6	1	23	663	686	663	686	0.97
10	12	0.00038	0.031	15.2	0.8	1	23	694	717	694	717	0.96
11	12	0.13	10	7.2	1.9	3	23	725	747	723	747	0.91
12	12	0.002	0.16	12.9	2.6	1	22	753	774	753	774	0.96

Sequence Information

Coding Sequence: ATGGAATCAAATGTATCGTTTTTCAGTCTTCCAGTTGTAGACAATGGAGACGTGGATTTTAGCAAAATCAAATGTGATAATGAAGACCTACACCCTACTTTACTTTATGTCCTGACACAATTCTTGTCAGGAGATGAACCCCTGGAAGAACCTGACTTGAATGGCCCAACAACCTTGCATTGTGAGATCTGCAGAAAACAGTTTGACAATGCTAAGAAATATTATGGACACTTACGAGTTCATTCCAAAGATAACCTTTGGATGTGTGATAAATGTCCAAATGAGAAGTTTTCCACTAAACAACAGCTGATGAAGCACAGCCTTATACACAAACCCCTTGAGCGTGTGTGGCAATGTCCACAGTGTGATATGTCATTTGAGGCCCTGTGGAGGCTCCAGCAGCACCTGTTTGCTAAACATTTGGATTACAGACCACACAAATGTGACACATGTGAAATGTCATTTCATAAACTATCCGACTTGAAAAAACACCAGGACATTCATAATGATGTAAAGAAACATGAGTGCATAGAATGTAAAAAGAAATTTCGTGACATATCAAATATGAAACGTCACATGCTGAGCCACAGAGACGAAAGGCCCTATCCATGTCCGGGGTGTGGAAACAGATTTAAGCAGATAGCATCAATGAAACGTCACAGCCAAAGATGTGCGATGGTCAAGCAGGGTACAGAGATAACGGACAAAACTATAAGGAAAAACTATTGTCGAGTCTGTGGCTTGACATTCCAATACAAAAGCGCTTTGCTAGAGCATTGTGTCAGACAACATCCCAATAATCAGACATCTCCGGCCCCTATAAAGACAGCAAATGTCGAGAAGTCCAACCAGCTCAAGATCGATACAAACCCTTCCGTAATCGACACAAGCCAATCAGTTAACACAAACATAAGTAAACCACTTAACTTGACCACTACTCAGCACGTGGTAAATTCAAACAGTTCTTTAAACGTAAACATAGACGCAACTCACCCGAGCAGCGTAGACATAAATCGCCAATTAAACATAGACACAAACCGGACTGTCGACAACATTGTAGATGATATCCTGTCAGCCGAAGACGACTATCTGAATCGACATCCCATGTCGAACCAAATGCTCAACTACAATCCACAAGAACCTGACAATCATGAGAACCTAATGCAAATAGAACTGTTAAAAGACATGAATCAAATGCACATATTGGATGATGAACTGTTGTACAACGATTTAGATTTCGACAGCTTTCAAACTATGTGTAACACGAACGATATGGACTACACAGATAAAAATGAGCTATTATTTGATATAGCTGACGGTAGAAGCATAGACCAGGATTTGATGAACGCTCTTTATCAAGTCAAAGGAGACAATTTACCTGAAGAGCTATTGAATGAGCCAGGAATTTTAAACAACAATGATAAAGTTAATGATTTTTTAACTAACCCAGCTGTATCAGTAAATGAATGCTCCACTATATTTGAAAGCGATGTTGATTTAGAAGCCAGTACTAATTTAGCGGCAAACTTGAATCAGCTAATAGGCGAAAACTTCGTACAATACATATCTACGGAACATGATGATACTTTTATTATAAGTTTAAATAGTGAAATTGATGCGGAACAGCTGACTGATATGTTGAACATAGGTGGTGGGTCAATGGACGAAAATACTAAAAATATTGTAAAGCAAACAACTAAAGAGAACATTGAAACTACTTCAGAGCCTAGCATAGTCACTGTAGCAAATGTTCCAGAAAATAATGACCATATGAAATCAACTAACCAAACAGTAACTCAACCAATATTAGTAAAAGTGGATGGTGTCACGAACAAGGACAACAAAGCTGATATTCCACAACAAAAAACAAAAGCCGTTAAAACAAAAAAACGGATAGTATACGTTTGTCGGAAATGCAATAAGGTTTTCAAAAAAAAGGACAACTACAAATCTCATAGAGCTACCCACGATGCTTCGCTGCGCCAACACAAATGTAACATATGCAGCGAACGCTTCAGCTACCGTTCCACGTTGAACAAACACGTGAAGAAACAGCACATGCCCCTAGTTAAGGCTGCTCATGAGTGCACTCAGTGTGATAAAAGTTATGTCGCTGCTTGGATGCTAAAACGCCATTTGACCCGCGACCATGAAATGATACTCCCGTTCCTATGTGATGAGAAGGGATGTGGCAAGAAATTCTACATACAATGCGATCTGGACATTCATAAAAGGTTTCACGCAGACGAGCGCCCTTATACCTGTGATATATGCAATCGTGGTTTCCATCTGATGTCACATTACAAGAGGCACGTTCGCACCGTCGACTGCACTACTAAAATGTAA
Protein Sequence: MESNVSFFSLPVVDNGDVDFSKIKCDNEDLHPTLLYVLTQFLSGDEPLEEPDLNGPTTLHCEICRKQFDNAKKYYGHLRVHSKDNLWMCDKCPNEKFSTKQQLMKHSLIHKPLERVWQCPQCDMSFEALWRLQQHLFAKHLDYRPHKCDTCEMSFHKLSDLKKHQDIHNDVKKHECIECKKKFRDISNMKRHMLSHRDERPYPCPGCGNRFKQIASMKRHSQRCAMVKQGTEITDKTIRKNYCRVCGLTFQYKSALLEHCVRQHPNNQTSPAPIKTANVEKSNQLKIDTNPSVIDTSQSVNTNISKPLNLTTTQHVVNSNSSLNVNIDATHPSSVDINRQLNIDTNRTVDNIVDDILSAEDDYLNRHPMSNQMLNYNPQEPDNHENLMQIELLKDMNQMHILDDELLYNDLDFDSFQTMCNTNDMDYTDKNELLFDIADGRSIDQDLMNALYQVKGDNLPEELLNEPGILNNNDKVNDFLTNPAVSVNECSTIFESDVDLEASTNLAANLNQLIGENFVQYISTEHDDTFIISLNSEIDAEQLTDMLNIGGGSMDENTKNIVKQTTKENIETTSEPSIVTVANVPENNDHMKSTNQTVTQPILVKVDGVTNKDNKADIPQQKTKAVKTKKRIVYVCRKCNKVFKKKDNYKSHRATHDASLRQHKCNICSERFSYRSTLNKHVKKQHMPLVKAAHECTQCDKSYVAAWMLKRHLTRDHEMILPFLCDEKGCGKKFYIQCDLDIHKRFHADERPYTCDICNRGFHLMSHYKRHVRTVDCTTKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -