Asyr008195.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000081.1:593057-594736[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8e-06 0.00015 22.4 1.5 2 23 98 120 97 120 0.96 2 14 0.0003 0.025 15.5 0.8 2 23 127 149 126 149 0.94 3 14 0.018 1.5 9.8 2.3 2 23 156 178 155 178 0.93 4 14 1.7e-07 1.4e-05 25.7 1.0 2 23 186 208 185 208 0.96 5 14 4.2e-05 0.0035 18.1 1.2 1 23 214 237 214 237 0.95 6 14 0.071 5.9 8.0 1.4 1 23 244 267 244 267 0.97 7 14 4.5e-05 0.0037 18.1 0.7 2 23 273 295 273 295 0.96 8 14 0.0015 0.12 13.3 0.7 1 23 314 337 314 337 0.96 9 14 0.0025 0.21 12.5 0.8 5 23 350 369 347 369 0.92 10 14 0.00011 0.0093 16.8 2.9 2 23 375 397 375 397 0.97 11 14 0.082 6.8 7.8 4.9 2 23 405 427 404 427 0.96 12 14 0.0034 0.28 12.1 6.2 1 21 432 452 432 454 0.94 13 14 0.021 1.8 9.6 1.1 1 23 460 483 460 483 0.96 14 14 3.7 3.1e+02 2.6 0.1 2 12 525 535 524 544 0.76
Sequence Information
- Coding Sequence
- ATGGAGGAAGTCTACGTTAAGAGTGAACAAATCGAAATAGAAGTGACACGAGAACCTGCACTACTAGAGGGTCCGAAAGGTTCTATTAAAACTGAAAATGGCAGTGAAGACATAGAGAATGATCATAAAGACCATGAAACAAGTGCCCACACAATATTCATAAAAGCTCCTGAGGAAAATTTACAAGATACAAATAGCGGAGATGAAAATTCATCTCTGGATGTGCAAGGTACATCCCAAAACACGGATGCACTTGGTAAGGTTTATGAAAATGGTAAAGTAAACCGAGTAAAGTGCGCACAATGTAAAAAGACATTTAAAAACAGAGCTAACCTAAAGAATCACATCAAGTATGTTCACGCCAATGAACCTGACATTGAATGTACTGTGTGTTTCCGTACATTCAAGTCGGTACCACATTTACGGTCTCACATGGGTTCTGTTCACGCTAAAATTGAAGAGGTTGAATGTCAGCAATGTCACAAAATGTTTCTGAATAAAAAGAAATTGGCCAATCACATTTATTATTCCCATAGACAACCCGAGGATGAGGTGAGTTGCAAAATCTGCGGAAAATCGTACAAGAGTCGCTTTAATTTAAAGATACATATGAGATATGTACACCCTAAAGGAGACCCACATCCTTGCCCATTCTGCTACAAAACTTTCAAAGTAGAAATGCTACTGCAACGTCACATGAAATGGGCTCATCCAGGAGACGGAATGATCTACAAATGTCAGGAGTGCTACAAAATTTTGCCATGTTTAGACGGTTTGAAGACACATATGAAAAATGTTCATTTATACAACAGAGCTACATGCGACATTTGTAAACGAACATTGAAGACAAACGCATCTTTAGAGAGGCATATAAAAAATGTACACAATGGCAAGAGTAAAGAGGACAGTGGAGAAGTCGCACCATGCCCACCAGCAGAATTTATGTGTAGATTCTGCGACAGACCATTTGCTAGCAGTACATCTATGTATTGGCATATAGAAAGATATCATGCTCAATCTCAGGACATACCCAAGAACTTATGCATTATTTGCAACAAGGAATTTTCTGATTATGCATCATTGCACAGGCATCTAACATCTGTCCACTCGCTAGAGACAGCAACTTGTAAAATCTGTTGTAAAGAATTTAAATCCCCGACTAACCTACAAAATCATATTAGGATAACGCATGCTCCACCGGAAGCTACTAAAACCTGTGAGACATGTCAGAAAACGTTCAAATGCGCTTTACACTTACGAATGCATGTTATGACTGTACATGCTGAAGGTGAATTCCCCTGTGATATCTGTCACAAGACATTCACATCCATCAAATATTTAAGCAAACACAAGAAATGTCACGTAGAATCTAGAGATTTCCAGTGTGATTTATGTTTAAAAATGTATAAAAGTGTCAATGCAGTTAGAAAACACAAGAAACAAGTTCACAATGGTGTTAAGTGTAGTATATGTAATATAAAACAGATCAATCTTGAAGATCACATGCGGAAGTGTCATGCTGACTACGATCAGAATACTTCAGAAAGTGATCAGACAGAAATTGAGGAAATTTCTTGCAGTAAATGTGGTACAAGTATAAGCAGTTTAGAATACAGTGACCATTTACAGAAATGTGGATTAGGACAGATGGTCGAGGTTAAAATTGAACGTATAGAATGA
- Protein Sequence
- MEEVYVKSEQIEIEVTREPALLEGPKGSIKTENGSEDIENDHKDHETSAHTIFIKAPEENLQDTNSGDENSSLDVQGTSQNTDALGKVYENGKVNRVKCAQCKKTFKNRANLKNHIKYVHANEPDIECTVCFRTFKSVPHLRSHMGSVHAKIEEVECQQCHKMFLNKKKLANHIYYSHRQPEDEVSCKICGKSYKSRFNLKIHMRYVHPKGDPHPCPFCYKTFKVEMLLQRHMKWAHPGDGMIYKCQECYKILPCLDGLKTHMKNVHLYNRATCDICKRTLKTNASLERHIKNVHNGKSKEDSGEVAPCPPAEFMCRFCDRPFASSTSMYWHIERYHAQSQDIPKNLCIICNKEFSDYASLHRHLTSVHSLETATCKICCKEFKSPTNLQNHIRITHAPPEATKTCETCQKTFKCALHLRMHVMTVHAEGEFPCDICHKTFTSIKYLSKHKKCHVESRDFQCDLCLKMYKSVNAVRKHKKQVHNGVKCSICNIKQINLEDHMRKCHADYDQNTSESDQTEIEEISCSKCGTSISSLEYSDHLQKCGLGQMVEVKIERIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -