Asyr021957.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000384.1:28935-51292[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00037 0.03 15.2 0.2 2 23 140 161 139 161 0.93 2 11 0.00053 0.044 14.7 2.4 1 23 167 189 167 189 0.96 3 11 7e-05 0.0058 17.4 0.6 1 23 285 307 285 307 0.98 4 11 4.2 3.5e+02 2.4 0.3 2 23 314 336 313 336 0.87 5 11 0.00046 0.038 14.9 0.0 3 23 394 415 392 415 0.90 6 11 0.0033 0.28 12.2 0.2 1 23 441 463 441 463 0.93 7 11 8.7e-06 0.00072 20.3 0.2 1 23 490 512 490 512 0.98 8 11 0.00057 0.047 14.6 0.2 1 23 518 540 518 540 0.97 9 11 0.00032 0.027 15.4 0.3 1 23 546 568 546 569 0.95 10 11 0.0084 0.69 10.9 0.1 1 23 582 604 582 604 0.97 11 11 0.0036 0.3 12.1 0.1 1 20 764 783 764 786 0.93
Sequence Information
- Coding Sequence
- ATGGATGGCGATAGGGAGTTCAACCTCCATTGGGGAGGAGAGGTTGCAGTTAAGCATGATCCAGATGCAGTAAAAAATGAAGTCATATATGACCTTGAAAATGTGCACAGGTCCTCTTTTTCTAATATGACTTCAGACGAAATGATAGCCGACACGGACCAAATGGCAGCTGAGAACTTGATGTTCTTGGCTCAAGATGTCATTGGTTATACTGAGACAGCCGAGCTTGCAGATGACCCTAATGTTGAGTGTGTTACTGAAGAGGTCATTACTGATGATTGGGTACCGGGTGGTCAAGAGAGGGTGGAAGTACCAATGGAACACTTAACGCATCCCTTATTAGTTCTAAAAGAGGATAATGATATTGATGTTCCACTGCCGACAGACCAAGATGAGTACACAGCAATGCGTCCGTGGCCGTGCGACTTCTGCTCGCGGCGGTTCCGCAAGAAGGCGGCGCTGATGAACCACATGGTGGCGCACCAGAACGACCGGCCGCACGCGTGCAACCTGTGCGGCGTGCGGTACGTGCGGAAGTGCGACCTAATGAACCATCTCAAGGTGCACGCGTATGTACCTGACGATGCCGACTCGCAGGATATTGAGGATCTGCTAGAGAACAACCAAATCATCAAACCAAAGAAGAAGCGAGGGCGACGGAAAAAGATTCCGGAACCAGAGGAGGATTTGTGGGAGAACATGACATCAGCGCGCACGCAGCAGTGGTCGAGACGCGCGCGGGAGCCGGTGAAGCCGCCGCCGCCCCCCTCGCCCCCCGCCCCGCCCTCGCCCGCCTTCGAGCCCGCACCGCCCTCACCCCCGCCGCCGCCCCCCGCCGACCCATCCAGGCCCTTTGAGTGCAGGCACTGTGGCATCGGGTTTGCTAGGGAGAAGGCACTTCAGTCTCATTCAAGGATTCACGGCGGGGAATCTCCGATGGAATGCGGCGAGTGCGGCGAGCTGTGCTGGTCGCGCGAGTCGCTGGCGCAGCACACGGCCCAGCGCCACCCGCACCTCCCCCCGCACCTCGCCCCCGCCGCCGCGCACGACGCGTACAACGACTCCGACTCCGGTGACGACATGGATTTCCGACTATCCCCCGAGTCCCAACCTAGCGGTGGAGCCGAGCGCGCCACGTATTCTAACTCATACGACACGATGCGAGGTCCGGAACTATTCTGTTCAGATTGTGGCGTCGCCTTCCAACGGGCCGATCTTCTCAGGAGACATGTCGCGGCCGCACATAGCTACTTGCGCGCTGGCGGGGCGGGCGGGAGCAGTGGAGGAGGTACTGGCGGGGGTGAGGGGGAGTGGGGCGAGCACACGTGCGACGTGTGCGGGGAAGTGTGCCGCGACGCGCTGCAGCTGCTCGCGCACGCCGAAGGACACGCAGACCGATCCAAGCCCAGAATGAAAAAATCTTCCAAGGGTCGTAATAACGCATCAGAATCAAGCAACCCCCGCCAATTTCCATGTAGAGAATGTGGCAAAGTATTCGGGTCTCGCAGCTCGCAGCAGATCCACATCCGTATCCACACGGGCGAGCGGCCGTACGCCTGCCGCTTCTGTTGGAAGGCTTTCGCAGACGGGGGCACACTTAGGAAACACGAGCGGATACATACCGGAGAGAAGCCGTACGCATGCGCCGTGTGTCCCCGCGCCTTTAATCAACGCGTGGTGCTACGGGAACACGTGCGCTCGCACCATTCCGCGCCCGATAGGAGGACCAATGGTAGTTCAACGTACAGCTGTGTAGTATGCGGCAGGCCGCTACACTCGAGCGCGGAGCTGGTGCAGCACCTTATACAACACTGCGACGCGAACACCGCGCTCAGAAGGCAGCCGCAGACTGGACCCCGTAAATACAAACGCAGACGAAAGCTCAAGAGTGATGTATCACCAGAGAGGTCCGAGTGGCGCACACCCTCCCCCGTGCCCTCCCCCTCCCGGTCGCCCTCCGCCCCGGTGCGCTCTCGTTCCCCCTCACCCTTGCCCCCGCGGTCGCCCCCTCGTCGCCGTCGCCGCCGCGAGCCGCCACCGCGCCCCCGCATGATACACACGGAGGAACCTAAAACTAGGAACAAACAGGTTCGCACACGTCGACCGCCTCGTCATCCTGCCGATGATCTCCGCGCTATCGGGCCGCACTCGCCTTCGCCGAAGCGTGACCTTCAGCAGTATTCTCTAAAGCGCGAGCTTCAATCACCTAAACCAGAACCTACCGTCTCCCCTGATCGTGTCCAGTCACCTGAGCTCCCGATGGACGAGGTGACCGACGAAGGTGGACCGTACAAGTGCGAGATGTGTTCGATGGAGTTCGCTCGACGCGATGCGTTGTTACTCCACGTGCCCGTGCATATATGA
- Protein Sequence
- MDGDREFNLHWGGEVAVKHDPDAVKNEVIYDLENVHRSSFSNMTSDEMIADTDQMAAENLMFLAQDVIGYTETAELADDPNVECVTEEVITDDWVPGGQERVEVPMEHLTHPLLVLKEDNDIDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDDADSQDIEDLLENNQIIKPKKKRGRRKKIPEPEEDLWENMTSARTQQWSRRAREPVKPPPPPSPPAPPSPAFEPAPPSPPPPPPADPSRPFECRHCGIGFAREKALQSHSRIHGGESPMECGECGELCWSRESLAQHTAQRHPHLPPHLAPAAAHDAYNDSDSGDDMDFRLSPESQPSGGAERATYSNSYDTMRGPELFCSDCGVAFQRADLLRRHVAAAHSYLRAGGAGGSSGGGTGGGEGEWGEHTCDVCGEVCRDALQLLAHAEGHADRSKPRMKKSSKGRNNASESSNPRQFPCRECGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRTNGSSTYSCVVCGRPLHSSAELVQHLIQHCDANTALRRQPQTGPRKYKRRRKLKSDVSPERSEWRTPSPVPSPSRSPSAPVRSRSPSPLPPRSPPRRRRRREPPPRPRMIHTEEPKTRNKQVRTRRPPRHPADDLRAIGPHSPSPKRDLQQYSLKRELQSPKPEPTVSPDRVQSPELPMDEVTDEGGPYKCEMCSMEFARRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208554;
- 90% Identity
- -
- 80% Identity
- -