Asyr007402.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000073.1:2270391-2275378[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.098 8.1 7.5 3.8 1 23 118 141 118 141 0.96 2 22 0.2 17 6.6 0.0 3 23 171 192 169 192 0.94 3 22 0.014 1.1 10.2 1.4 2 23 215 237 214 237 0.95 4 22 0.00013 0.011 16.6 0.2 1 19 242 260 242 261 0.96 5 22 1.3e-05 0.001 19.8 1.4 1 23 269 292 269 292 0.96 6 22 0.005 0.41 11.6 0.4 1 23 297 320 297 320 0.94 7 22 0.066 5.5 8.1 5.9 1 23 329 352 329 352 0.97 8 22 0.19 16 6.6 0.3 2 23 359 380 359 380 0.96 9 22 0.0015 0.13 13.2 2.5 1 23 386 409 386 409 0.97 10 22 1.4 1.1e+02 3.9 0.2 2 23 529 551 528 551 0.94 11 22 0.0096 0.8 10.7 2.6 1 23 556 579 556 579 0.97 12 22 0.0013 0.11 13.5 7.4 1 23 583 606 583 606 0.98 13 22 0.0048 0.4 11.7 0.2 2 20 638 656 638 658 0.92 14 22 0.0053 0.44 11.5 4.4 1 23 709 732 709 732 0.97 15 22 0.89 74 4.5 0.0 2 23 763 785 762 785 0.94 16 22 0.01 0.83 10.7 3.8 1 23 806 829 806 829 0.97 17 22 0.053 4.4 8.4 0.1 3 23 836 857 834 857 0.90 18 22 0.11 9.5 7.3 0.9 2 23 865 887 865 887 0.95 19 22 1.4 1.1e+02 3.9 0.4 2 23 893 915 892 915 0.88 20 22 0.0012 0.1 13.6 4.6 1 23 919 942 919 942 0.98 21 22 0.026 2.1 9.4 0.4 3 23 950 970 948 970 0.91 22 22 0.00018 0.015 16.1 0.7 1 23 976 998 976 998 0.97
Sequence Information
- Coding Sequence
- ATGTATTTTATTTGGATATCACGGTCGACTATTGTTTCGGTTTTTTCCGAAAGCCTTCATCAGGATCTTAAGAGCTATCGCGCCAAAACCGAAGGCAGACAAAAGCGATCACGGAACTCTGACCCTAAGACGGCGACAGTACCTAAGTCGGAAATCAAAATTGAGAATACCGACTCGTTCGAAGACACCAAATTCGACAGTTTTGCACTATTTGAACCTTCTCAAACAAAAATTCTTAGGCATAAGGACGAAATATCAGCAAAGTTGTTCCAATGTCTGAAAGTGCGCAAAAATATCGCGTTTATTTTAAACAACTCGACGGCTATACCTTTCTCTCACGCTAAGAGTAAATTCAATTGTTTTGTATGCCACGAGGGATTAGATCGATGCGACACGCTACAGCAACATTATCGTAATGAACACTCAAAACATAAATTCAGCTTCACAGATAATGTCATAAAAAAAATCAACAAGAACACTTCTCTAAAACTGGATATAGCTGATCTCGCCTGTAAAATATGCCAGGAAAGAATTCCCGATTACAAACTTCTGATTGATCATCTAATATCAGCTCACAATGTAGAATACGATAAAGGTGCTACTGATATCGTACAACCTTTCAAATTACAAGACGATGATCTCAGATGTCACGTATGCGATGAAAAGTTTATATATTTTATCAAATTAGTCACACATTTGAATAATAATCATGAAGATAAGAAATACATGTGCGATATATGTGGGAAATCTTTTAAAGACATGAGCTCGTATAACCTTCACGGTTGGCAAGTTCATGGGCCTGGTTTTAATTGTCAGGATTGTGGCAGACGATGCACCAACGCCTCTTTGCTTCGAGAGCACATGGCTAGTACTCATGGAAAAGGTACGTTTAAATGCAAAGAATGCCCAGCTGAATTCACTTCTGTATACAAAAGGAAGAAGCATATAATTGCTGTACATAAAGCCAAAGAAGTTCCAGCTTCGTTCAAATGTTCGCACTGTGAAAAAGTTTTCACATGTACATCGCAGAGAAACGTACATGTTCGAAAGGTGCATTTGCAAGAGAAAAACGAAGTGTGTCCTATATGTCAGGCACAACTGTTTAATAAAACTCGGTTAAATCTGCACATGGTTAAGCATTTAAGAGAGAGGAATCACGTGTGCGATTTGTGCGGAAAGAAATACCAGTGGAAGAAGAATTTGAAGGTTCATATGCAAAAGAATCACAGTATATTATTGTCTGCCGGAACGCAATATGGTACTAAACAAAGAACGAAGGGGAAATCTCGAGATTTTGTTCAACAATACCACGATAGTTCCTTTCAAATATCGCGGAAAGTATCTGTGCTTTTTCTGTGCCACCGAAATGGAAAATCGGGCAAAGTTGATATTAACCTTTCCTCGTTAAAAAGTAAGGAAATAGACCAAGTCAAAGTCGACGTGTCTACTATGCAATGTAAACTATGCTCAGAAATATTTGACAAGATCCATGATATAGGTTTTCATTTGGCATCAAAACACCACCTGCCCTACAAAACGGATGTTAAGTCCGATTTCCTCTCAACGTTCAGGCTTATTGACATGAAATGCCTCGTTTGCATTGAGACTTTAAAGGATTTCAGAAGTCTTGCCCTGCATATGAACAGCGAACATTCAAATAAATGTTTTGAATGCGATTACTGTCATACAAAATTCAACATAAAGAGGGTCCTGCAGGAACATGTAAGAAATAACCATAGGGAGGAGTACAAGTGCCACAAATGTTTGAAAACATTTAAATTCCACGCTGAGCTAATTAGGCATAAAAAGAAAGACCATATCTCCAAGTGCAATCTATGCTTATCCGCGTTTCCCTCATTGAAAATAAGATTAAAACACATGAAAGATGAACATGATCTGGTTAGAGGTGGTACTTGTAGCTTCTGTGGCAAAGTTTATAACAACAAAAATGCACTTTTAGACCACGCGACAAAGTGCACAGTTGGGGAACAAAATCAATCTGAAGAAATGGAAATCGTAACGGGGTCCGAGGATACGAAATATACAGTTAGAGCCATACGAACAGGAATAGCGTATATTATTAATAACACCGCTATTATACCCTTTAAAATCTCCCATGGGAAGTTTCGTTGTTTTTACTGCACGAAAGAGTTTGACAAGTGTGTCGATCTCAGGAGTCACACGAACTCAGATCATCCAGTTTGTGACGTGAAACTGAAGGCAATGAAATTGAAGGGTCTGTGCCCTTCGAAAGGAATGAAGATTAAAATTGATACATCATCGCTAAATTGCAATCTCTGTCCGGAGCAGGCGATCGACTTTGGTTCTCTAGTGGCTCATTTGGACACGATACACAAAGGAAATCTCGGGAATTGCGTGGAGTACTTTCAACCTTTTCAGCTCATTCACGACCGATTCCCATGCACATGGTGTGACAATGAGTTCAGACACTTCCACACACTTCTAAAACACGTGAATAAGGAACACACCGGGAACAGATTTCTGTGCATTTATTGCGGTAAACCGTTTCCTAACGGCATCACTTTGCGATCTCACGTAATCCGAACTCACAACGAGCAGAAGTTTCGGCGCAAGTGTACTATTTGTGAGCAAGAGTTTATATGCCAAAGTGATATGAATGAACACATGGGGAGGGCTCATAGAAAAAAGACTATAAAATGTCCCCAGTGCTTGGAGAAATTTGTCTCGCATTACGCCAAAGATTTGCACATTGTCAAAGTTCATAATGGAGGTCACAAGTGCACCTATTGCGGTGTGGTTTTTCCAAAATATTGTCGATTGACGAATCACATAAGGAGGTTGCATCTGAATGAAAAATCTGTTAAGTGTATTTTATGTGAAAAAACGTTCTTTGATGCACGTAGATTGAGAAATCATATGGTTATACATGTTGGGGAGAAAAACTTTGCGTGCGATTATTGCGGTAAAAAGTTTTTGAGAAAAAAGAATCTTGTTGGGCACGTCAGGTTGCATCTCAAGAAGGCTAGCCAGTTTCATAGTGTGAAAAGTCAAGGAGGTTATCTGTATTAA
- Protein Sequence
- MYFIWISRSTIVSVFSESLHQDLKSYRAKTEGRQKRSRNSDPKTATVPKSEIKIENTDSFEDTKFDSFALFEPSQTKILRHKDEISAKLFQCLKVRKNIAFILNNSTAIPFSHAKSKFNCFVCHEGLDRCDTLQQHYRNEHSKHKFSFTDNVIKKINKNTSLKLDIADLACKICQERIPDYKLLIDHLISAHNVEYDKGATDIVQPFKLQDDDLRCHVCDEKFIYFIKLVTHLNNNHEDKKYMCDICGKSFKDMSSYNLHGWQVHGPGFNCQDCGRRCTNASLLREHMASTHGKGTFKCKECPAEFTSVYKRKKHIIAVHKAKEVPASFKCSHCEKVFTCTSQRNVHVRKVHLQEKNEVCPICQAQLFNKTRLNLHMVKHLRERNHVCDLCGKKYQWKKNLKVHMQKNHSILLSAGTQYGTKQRTKGKSRDFVQQYHDSSFQISRKVSVLFLCHRNGKSGKVDINLSSLKSKEIDQVKVDVSTMQCKLCSEIFDKIHDIGFHLASKHHLPYKTDVKSDFLSTFRLIDMKCLVCIETLKDFRSLALHMNSEHSNKCFECDYCHTKFNIKRVLQEHVRNNHREEYKCHKCLKTFKFHAELIRHKKKDHISKCNLCLSAFPSLKIRLKHMKDEHDLVRGGTCSFCGKVYNNKNALLDHATKCTVGEQNQSEEMEIVTGSEDTKYTVRAIRTGIAYIINNTAIIPFKISHGKFRCFYCTKEFDKCVDLRSHTNSDHPVCDVKLKAMKLKGLCPSKGMKIKIDTSSLNCNLCPEQAIDFGSLVAHLDTIHKGNLGNCVEYFQPFQLIHDRFPCTWCDNEFRHFHTLLKHVNKEHTGNRFLCIYCGKPFPNGITLRSHVIRTHNEQKFRRKCTICEQEFICQSDMNEHMGRAHRKKTIKCPQCLEKFVSHYAKDLHIVKVHNGGHKCTYCGVVFPKYCRLTNHIRRLHLNEKSVKCILCEKTFFDARRLRNHMVIHVGEKNFACDYCGKKFLRKKNLVGHVRLHLKKASQFHSVKSQGGYLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -