Asyr015413.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apeira syringaria
Gene Symbol
-
Assembly
GCA_934045895.1
Location
CAKOGY010000197.1:1895249-1914607[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00027 0.023 15.6 3.4 1 23 246 268 246 268 0.98
2 11 0.0019 0.15 13.0 11.4 1 23 274 296 274 296 0.96
3 11 0.00014 0.011 16.5 5.5 1 23 302 324 302 324 0.98
4 11 7.9e-05 0.0066 17.3 1.3 1 23 330 352 330 352 0.98
5 11 6.9e-06 0.00058 20.6 1.0 1 23 358 380 358 380 0.97
6 11 8.9e-05 0.0074 17.1 0.0 1 23 386 408 386 408 0.97
7 11 5.3e-05 0.0044 17.8 0.4 1 23 413 435 413 435 0.96
8 11 0.00086 0.071 14.0 1.5 3 19 443 459 442 465 0.92
9 11 2.8e-05 0.0023 18.7 0.4 1 23 536 558 536 558 0.97
10 11 0.00025 0.021 15.7 1.5 1 23 623 645 623 645 0.96
11 11 0.0065 0.54 11.3 5.2 5 23 658 676 649 676 0.89

Sequence Information

Coding Sequence
ATGTGTATGCCAACGCCTAACAATGTGTCTGGCTTCGGCGGTTACTCCTGGGGCTTCACCAGTACCGCTGACCTTACCAAAGGCGAGGTGGAAACTCCGAGCAGCCTCAGCTACACACTTGGAAGTTCTGTTTCACCTGAGACAACTCTTACAGTAATGTCCCACAAGACACCTCAAGTTCAAGAGAAGGTTGGCACTGTCTCAGTTGCTGTCTCTAACACTGGAGCTCAAGTCACAAGAGTGGTCACAACAGGGGCCCCAGTGACAGCGAGAAGAGCTATGTTTGTACTGAATGAGGCACCTACTCATACTATAAACAGGGTCTCACAGCAGAACCAGACTGCAACAATTCACACAGCAAATCTAGCAAGCAAGCCATTTATGACACCAATTGGACCGATTCAACTGACAGCAGAAGAATGCAATGAGATTCTCATGAAACGAGCACTTCAAGCACAAGGAATCGCCACCCCAGTTATAGATGCATCACAGTTGAACCATACACTACTTAATGGTGGACTAAAGAGTTTAGCAGAAGTGACTTCACAGCAAAATCAACAGCAAGACACTATACAAACAACCACAGTACAGCAACATCATCTATTGCATGCAAAGCAAGAGCCTGGAACAACAAACAATTCACCAAAAACGGTATATTCCCAGACGGAGCTAATGACGACCAACACCGTGATGACGACTGCGCCGCCCACGCAGCCCGTAGTCAAGGAACGACCGTACTCCTGCGATGAGTGCGGCAAGTCATTCCTGCTCAAGCACCATCTTACTACTCACGCTAGAGTCCATACTGGTGAGCGGCCCCATTCGTGTACGCACTGCGGCAAAACATTCGCGCACAAACATTGCCTCAACACGCATCTCCTTCTGCACTCCAACACCCGTCCCTATCAGTGCGGCGAGTGCAAGAAAACTTTCACATTGAAACATCACCTCCTCTCCCACTCACGGGTACACAGTCGAGACCGCCCTTACGTTTGCAACGAGTGTGGGAGAGGCTTCCCATTGAATAGACATCTCGTAACGCACAGGAAGTATCACGCCGGAGAAAGACCTTTCGTCTGCAATGACTGTGGAGAGAGCTTTGCGCAAAAGGAGCACCTGGTGATGCACAGCCGTTTCCACGGGTCGCTGTCCCCGTTCGCGTGCGCTGACTGCGGCGCGGCGTTTGCGCGCAAGTTCCAGCTCGTGAACCACGGGCGCGTACACGGCCGTGTGCCGCACGCCTGCCCGGTGTGCGGGAAGGAGTTCCTGCAGAAGCGGACGCTCGTCGCGCACATGAAGGTACACACGGGTGACAACGTGGTCGCATGCCTAGAATGTGGCGAAGCTTTCAAGTCAAAGAGCGATCTCCAACAGCATTGTAAAGTAACGCGTCATTGTTACCCAACACAAGTGCAGCAAACACAGCAAGTTCAACAACAGCAGCAGCAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAACAACAGCAACAACAGCAGCAGCAACACCAGACAGTTATAAAAACAGATGACTTCAAGCCTCAGATTGTTCAGGTGATAGATGCTGACGGTCAGATTGTAACAGAAAAGGCGCCGGGTTATGCGTGTCCTGAGTGTGGATCCTGCTTTAACACAAAGGAGGCGCTGTCGCTGCACGTGCGGCTGCACGCGGGGGACCGCACGTGCGTGACGGACCTGTGCGCGCTCACGGCCGCGCTACAGCCTGAGCTGGTCGCCGCCGCGCACCAGGCCTCGCACAATCAACCCATCCAGATCATATCTACGACTCCCAATAATAACGTAGTTCATACACGAGTAATAGCATCTGATCATCATCACGCAGCGCCGCGACCTAAAATGCATTTTTGTGGAGAATGCGGGAAAGGTTTTGCGGCAAAGCACGGGTTATTAGCACATCAGAAGAGACACCCGGACGGCAGCTGCACGCTGCGTACGCACGTGTGCGAGTGCGGGAAGGCCTTCTTCCAGAAGAACCATCTCATGCTGCACCAGCGGCAGCACATGGACCTGCCCTCCAGGAATAAATCAACATTTCAGAATCAACAACAGCAACAACAACAGCAAGCACAACAGGCGGCGCAACAAGCAGCGCAACAAGTGGCGCAACAAGTTGAACAACAAGTACAACAACAGGTCCAACAACAAGTCCAACAACAGGTTCAACAGCAACAACAACATCATCAGAATACGTTGGAGATTGAACAGGATCATCAACAACCGACGCATATACAAGTGGTGAACCGTTCGGGGCAAGTGATCGGCAACCAGATAGTGGTGGGCGGCGTGGCGCGGCGGCTGGTCGCGCCGCACGTGCACGTGTTCGGGCGCGACAAGCACGGCGCGCACAACAAGCTGCACGCGCAGCGGCAACACACCAGTGGTGACGTGAAAGAAGTGGGAGGGTTAGTCCTCTCTGCGGGTCGGGGTCCAAGTCTCATCAAGTACGAGATATCAATACCCCCACAAAACTCGGTAGTGCAAGTGCAGCAACTCGACTGA
Protein Sequence
MCMPTPNNVSGFGGYSWGFTSTADLTKGEVETPSSLSYTLGSSVSPETTLTVMSHKTPQVQEKVGTVSVAVSNTGAQVTRVVTTGAPVTARRAMFVLNEAPTHTINRVSQQNQTATIHTANLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGGLKSLAEVTSQQNQQQDTIQTTTVQQHHLLHAKQEPGTTNNSPKTVYSQTELMTTNTVMTTAPPTQPVVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHSCTHCGKTFAHKHCLNTHLLLHSNTRPYQCGECKKTFTLKHHLLSHSRVHSRDRPYVCNECGRGFPLNRHLVTHRKYHAGERPFVCNDCGESFAQKEHLVMHSRFHGSLSPFACADCGAAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKVHTGDNVVACLECGEAFKSKSDLQQHCKVTRHCYPTQVQQTQQVQQQQQQQQQQQQQQQQQQQQQQQQQQQHQTVIKTDDFKPQIVQVIDADGQIVTEKAPGYACPECGSCFNTKEALSLHVRLHAGDRTCVTDLCALTAALQPELVAAAHQASHNQPIQIISTTPNNNVVHTRVIASDHHHAAPRPKMHFCGECGKGFAAKHGLLAHQKRHPDGSCTLRTHVCECGKAFFQKNHLMLHQRQHMDLPSRNKSTFQNQQQQQQQQAQQAAQQAAQQVAQQVEQQVQQQVQQQVQQQVQQQQQHHQNTLEIEQDHQQPTHIQVVNRSGQVIGNQIVVGGVARRLVAPHVHVFGRDKHGAHNKLHAQRQHTSGDVKEVGGLVLSAGRGPSLIKYEISIPPQNSVVQVQQLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00896147;
90% Identity
-
80% Identity
-