Asyr010455.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- ZFX
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000117.1:726990-738005[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 5.4e-05 0.0045 17.8 0.3 3 23 271 291 270 291 0.99 2 15 1.1 95 4.2 0.1 6 23 303 321 303 321 0.93 3 15 0.29 24 6.1 0.2 2 23 332 354 331 354 0.95 4 15 1.5e-05 0.0012 19.6 1.0 2 23 377 398 377 398 0.97 5 15 3.6e-06 0.0003 21.5 0.5 1 23 406 429 406 429 0.97 6 15 0.017 1.4 9.9 0.3 1 23 435 457 435 457 0.88 7 15 0.082 6.8 7.8 0.6 3 23 465 485 463 485 0.97 8 15 0.26 22 6.2 0.1 1 12 491 502 491 505 0.84 9 15 0.22 18 6.5 1.2 1 23 615 637 615 637 0.95 10 15 0.00037 0.031 15.2 2.2 2 23 644 666 643 666 0.92 11 15 5.7e-06 0.00047 20.9 2.2 3 23 674 694 673 694 0.98 12 15 4.4e-06 0.00037 21.2 0.6 1 23 700 722 700 722 0.98 13 15 0.00019 0.016 16.1 0.3 1 23 728 750 728 750 0.96 14 15 0.0025 0.21 12.6 0.4 1 23 756 778 756 778 0.96 15 15 0.0012 0.1 13.5 2.3 1 23 784 807 784 807 0.96
Sequence Information
- Coding Sequence
- ATGAATATTGGTACTGAGCATGTTTATATTGTGAATCGCACTGAAAGTCAATCTACACTTTTACAGCAGAATTTTACAGTGCCTGTACATACATTACAGTCTGAAGATACTCAGGACTCAAGCAACCCATGTACCATGCCACAAAGCAGTGCAATCCACCTGACAACCATCATGCCAGGGACCCACATGTGTCGCCTTTGTGCAACTGTCACAGAGTTTGTGGTACCTATCTTTGAAGGTGAAGGACTGCAAAACCGCCTTGCAGACAAGATACATCAACATTTACCAATACAGGTATCGGAGAGCGACGTGCTTCCGACGGCGCTGTGCTTCCCGTGCACGAGCACGCTGCTGGCGTGGCACGAGCTGGCGCTGTGCTCCGTGCAGGCCGACACGGCCATGCGCGCGCGGTACAACCTGCTACACTCCTCACACTCACATAAGGAACATCAGCAAAACGACATAAGTGCTAATATTCACCAGCCTAAACATGAAAAGTCACAAGATATAAGAAAAATCATAAAAAATGTTTTAACAGAATACTTAAATTCACTAAAATTGGATGATAACTCAGAAATGGAATTGGTTTGCCAAAAATGTGTCTCGAATCCTGCTCTGACAATGGACATATTCCCCGAACATCTCATAGCACAACATCATTCAGAATCATCAAGCGAAGATACCATACTTAAGTTTATAAAAGATCATGTCACATTTGAAGAAACACTCGTCACCGATTCGGATCGAGAAGAGTCCGAATTTACAGATCAAAATGAAATACTTAATTCGAATCCGTTGCCAACACTGCTCTGTCCCTATTGCGAAACCTCGTTTTCATCGCCTTCTAGGCTCATTTATCATCTGAATAAGCATGTAGAAATACCGATAGGTCGCGGAATGAAATGTTGCAACGCAGAGTACGATAACAAGAGCAATTTCGTCGACCATCTGCAAGAACAACACGTCAAGCGACTAATCTACGATGCGGAAACTACGTGCAAAAGTTGCGGATTTGCAGCGGAGACTATAAATGATTTGCAAAGCCACGTGAGAGAAACGCACATGGAGAAATCTCGCCCCAAGAAAAAAGCAACCGAGAGCGCTAAGAATCAAAAATGCATTCCGGCCGTGTGTCCCATGTGTAACAAGACCCTCTCCAACAAATACAACATGTTCATTCATATGAAGTCTCACGGAGACGAAAAAAACCTTCGGCACGTCTGCGAGAAATGCGGACGCGGATACAGCACGAGAGGAAACCTGATTCAACACACGAGAGTTGCCCACGAAGGAGTGTCGAAATACGTGTGTTCTGTTTGCGGAGAGACTTTTCCGTCGCGGCAACGGCGCGATATCCACAATCGCATACATTCCGGCTTTCGTCCCTTCGGTTGCGAGATTTGCAACAAGTGGTTTCGCGCCAAAAATACGCTCGACCGGCATCGCGATATGCATCTAGACGCGAGAAAATACCCGTGCACCGTCTGCGGCAAATCGACGGACGACCTCGCGAACGGAGTCGACTCCGCGAGCGCCTCGGAACGCGAACGCGACGAATCGGACGAGGACGACGCGCCCCTCGCGCGCTTAGTATCTAAGAAGTCGGACGATTTTTTGAAATTTTACGATGCTCTCGTCCGGTTGAGGGATCACATCGCCGAGGAGCACGTGACGTTAAACGCCTCTGGCTCGGAGGCGTCGAGCGAGCGCGGAAGCAGAGACGTCGACGCGTACGATGACCTGTCGCGCGGGAACATGCGGCGCGACCGGCTCGACGCGGGCACGCGCGCCGATATCGCGGCGGCGCGAGTGAGGGGCATGCGGCCCGACGGGCGGGTCGCGTACGAGTGCGGCACGTGCGGTAAGCGGCTCGGCTCTGCGCACACGTACGTGTTCCACCGGCGCATCCACACCGGCGAGCGCCCGTGCGTGTGCCACGTGTGCGGCAAGCAGTTCCGCGCGCCAAACGGGCTGCGGCGGCACCTCACCGAGACGCACGAACGGCGGCGGCGGCCCGCATGCGCGCACTGCCGCCGCTCGTTCGCTAACTCGCAGAACCTCAAACAACACATGCGGATCCACACCGGCGAGCGGCCGTTCGAGTGCGCACAATGCGGGAAGCGGTTTGCGCAGAGCGGCTCACTGCATGCACACGCCAAAACGCACTCGGAGCGGCGCGCGCACGCGTGCCCCGAGTGCGGCGCGCGTTTCCGTCTCCGCGCAGGCCTCGCGCGCCACCGCCTGCGCCACTCGGGCGAACGGCCGCACCGCTGCACCCTGTGCGCGCGCCGGTTTCGCGCCCGCTCGGACCTTGCTGCACACGTACTCGCGCACTCGGGCGCACGTCCGCACGTGTGCCGCCTCTGCCCTGCCGCCTTCCGTCAGCGCCGAGCTCTAACGCATCACGTCAAGCGACTGCACCGACTCGAACCGTCGCCCCCGCCTCATCCTCCGCCCCCGCCCCCGCAACCTCTTTACGCTCCCTACTGA
- Protein Sequence
- MNIGTEHVYIVNRTESQSTLLQQNFTVPVHTLQSEDTQDSSNPCTMPQSSAIHLTTIMPGTHMCRLCATVTEFVVPIFEGEGLQNRLADKIHQHLPIQVSESDVLPTALCFPCTSTLLAWHELALCSVQADTAMRARYNLLHSSHSHKEHQQNDISANIHQPKHEKSQDIRKIIKNVLTEYLNSLKLDDNSEMELVCQKCVSNPALTMDIFPEHLIAQHHSESSSEDTILKFIKDHVTFEETLVTDSDREESEFTDQNEILNSNPLPTLLCPYCETSFSSPSRLIYHLNKHVEIPIGRGMKCCNAEYDNKSNFVDHLQEQHVKRLIYDAETTCKSCGFAAETINDLQSHVRETHMEKSRPKKKATESAKNQKCIPAVCPMCNKTLSNKYNMFIHMKSHGDEKNLRHVCEKCGRGYSTRGNLIQHTRVAHEGVSKYVCSVCGETFPSRQRRDIHNRIHSGFRPFGCEICNKWFRAKNTLDRHRDMHLDARKYPCTVCGKSTDDLANGVDSASASERERDESDEDDAPLARLVSKKSDDFLKFYDALVRLRDHIAEEHVTLNASGSEASSERGSRDVDAYDDLSRGNMRRDRLDAGTRADIAAARVRGMRPDGRVAYECGTCGKRLGSAHTYVFHRRIHTGERPCVCHVCGKQFRAPNGLRRHLTETHERRRRPACAHCRRSFANSQNLKQHMRIHTGERPFECAQCGKRFAQSGSLHAHAKTHSERRAHACPECGARFRLRAGLARHRLRHSGERPHRCTLCARRFRARSDLAAHVLAHSGARPHVCRLCPAAFRQRRALTHHVKRLHRLEPSPPPHPPPPPPQPLYAPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -