Asyr008624.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- salm
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000085.1:1746658-1748397[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.53 44 5.2 2.3 2 23 176 197 175 197 0.92 2 13 2.6e-07 2.1e-05 25.1 2.9 1 23 203 225 203 225 0.98 3 13 3.6e-05 0.003 18.4 0.8 2 23 253 274 252 274 0.97 4 13 0.00033 0.028 15.3 0.6 1 20 280 299 280 300 0.97 5 13 0.00018 0.015 16.2 0.5 1 23 312 334 312 334 0.99 6 13 3.2e-05 0.0027 18.5 1.2 1 23 340 362 340 362 0.96 7 13 7.7e-06 0.00064 20.5 4.0 1 23 368 390 368 390 0.98 8 13 5.6e-06 0.00047 20.9 2.5 1 23 396 418 396 418 0.96 9 13 5.4e-07 4.5e-05 24.1 1.1 2 23 425 447 424 447 0.96 10 13 0.41 34 5.6 0.2 3 23 454 471 453 471 0.92 11 13 0.0057 0.47 11.4 0.9 1 22 477 498 477 500 0.90 12 13 0.0076 0.63 11.0 0.5 1 23 506 530 506 531 0.93 13 13 0.011 0.93 10.5 3.7 1 23 537 560 537 560 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTTAAGATATGCAGAGTGTGCCTCGACAGAACTGCAACGATTTCTGTGTTCAACAAGCAGGACGACGTGCAGTACTGCAATAAAATTATGAAATGCGTGAATGTGGTAATCGTAGAAGGTGATGGCTTTCCCGACGCGATATGTGAGGGTTGCGCCGGTGACCTTGCTGTAAGTTACGAGTTCGCGACCCGCTGTGAAGCCTCTGACAAGGCACTGCGCTGTCTTGACCTTTTGCAGACAACCGACTGCGAAGCAGAACGTAAATTTTCTCCTGAGCCAATCAAACATGAATCCAAGTTTAAATGCAACATAATAACTAATCAAAACAATGATCTCTGCGAAAGCGTTTTAGATCATGAACCACTCTCGGAATATTGTTATAAAAATGAATTTAAAAATGAGAGACCTGAAATATATTCCAATGGAAACAATTTCGGAAAGTACAAGTATAAGTTTAGCAAGAAAATATTGCCAGAACACTTGCGCTCAAGAAAGCTACGACTTAAAACGGGTCCCATTCAATGTATAATTTGTAATCGAGTTCTCACATGTCACTCTGCGTATGAGCTACACATGCGTACACATACAAAGGAAAGGCCATATTCCTGTGACATCTGCAAGAAAACATTCTCTAGTAAATACACTTTAAAAAGCCACATTCAAAGACACTTTGGAATAATAGATTGCAAGAAAAATAGGACAGGAAATCTTGCAGATAGAAGAAAAACCAGACTTAAAACAGGCCCTTTACAGTGTGCTACATGTGGAAGGATGGTGTCAAGCCATTCTGCAATGGAGAACCACATGCGGACACATACTGGAGAAAAACCATTTTCTTGTGAACTCTGTGGAGCCAAATACAGATTCAAGGGGACTCTAAAAAGACATATGTACTGCAGCCATCCAGATGTACATCCTAATGCAAAGTATACTTGTGAACACTGTGGAAAAATATTTCTTGCAAAGAGTAGTATCATCATTCATATGAGAGTACACACAGGAGATAGACCTTATCTTTGTCCATTATGTCCTCAGAGGTTTCGACAGGTATCATCATTCATTCGTCATAAAAGGCGGCACACAGGCGAGAGACCATATACCTGCAATATTTGTAACAGATCATTCTATGATAAATGTTTACTTAACAAACACCAAAGTGTGCACAGTGTTGAAAAAAAATACAGCTGTCATATATGCAGCAAAACATTCAAATCTAAAGGAGCATTAAAGGTCCACACAGACAATCACAGCGAGACCAAGCTCTGGATCTGTAGCTACTGTGGAATGACATTCACATTCAAAGGTAATCTCAAAACTCATATCAGAAGAAAACATTCAGAAAAATCTGGAATGTGTTTGGTCTGCAATAAAGAGTTTGGCGATGTTGAAGCACACATGAGAGTGCACACTGGAGAGAAACCTTTTATTTGTAAAATATGTGATCAAGCATATGGAACTGTTCGAAGTCTGTCACATCACATGGGTTTTAAGCATAGAGATGCAGGAAAGTTTAAGTGTGCTTTGGAAGATTGTCAAAAGTCATTTCCAACTGCTGCAATGTTAGAGTTTCATGTGTTAAAGCACCATACACAAACAACTCCATATGTATGTCAACACTGCTCACGTGGGTTCCTTCGTCCTTGCGACCTCTCTCGCCATCTCAAACTTAACCACATGGACATGCAAACTCAAGTCAAATCACAGTTTCTCAAAGCAGGCATCAAAGACCCATGA
- Protein Sequence
- MEFKICRVCLDRTATISVFNKQDDVQYCNKIMKCVNVVIVEGDGFPDAICEGCAGDLAVSYEFATRCEASDKALRCLDLLQTTDCEAERKFSPEPIKHESKFKCNIITNQNNDLCESVLDHEPLSEYCYKNEFKNERPEIYSNGNNFGKYKYKFSKKILPEHLRSRKLRLKTGPIQCIICNRVLTCHSAYELHMRTHTKERPYSCDICKKTFSSKYTLKSHIQRHFGIIDCKKNRTGNLADRRKTRLKTGPLQCATCGRMVSSHSAMENHMRTHTGEKPFSCELCGAKYRFKGTLKRHMYCSHPDVHPNAKYTCEHCGKIFLAKSSIIIHMRVHTGDRPYLCPLCPQRFRQVSSFIRHKRRHTGERPYTCNICNRSFYDKCLLNKHQSVHSVEKKYSCHICSKTFKSKGALKVHTDNHSETKLWICSYCGMTFTFKGNLKTHIRRKHSEKSGMCLVCNKEFGDVEAHMRVHTGEKPFICKICDQAYGTVRSLSHHMGFKHRDAGKFKCALEDCQKSFPTAAMLEFHVLKHHTQTTPYVCQHCSRGFLRPCDLSRHLKLNHMDMQTQVKSQFLKAGIKDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01208526;
- 90% Identity
- -
- 80% Identity
- -