Asyr007338.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000073.1:1754167-1768138[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.39 33 5.6 5.9 1 23 244 266 244 266 0.97 2 19 4.1 3.4e+02 2.5 3.0 2 23 292 314 291 314 0.91 3 19 0.00027 0.022 15.6 0.7 1 23 336 358 336 358 0.98 4 19 0.0002 0.017 16.0 0.5 1 23 362 384 362 384 0.98 5 19 9.5e-05 0.0079 17.0 1.5 1 23 389 412 389 412 0.98 6 19 2.8 2.3e+02 3.0 0.3 2 23 419 441 419 441 0.88 7 19 9.1e-05 0.0076 17.1 0.7 1 23 448 471 448 471 0.96 8 19 0.00075 0.062 14.2 2.7 1 23 475 497 475 497 0.97 9 19 0.00011 0.0095 16.8 0.2 1 23 501 523 501 523 0.98 10 19 0.012 0.96 10.5 1.7 1 23 613 635 613 635 0.94 11 19 0.57 47 5.1 1.1 2 23 661 683 660 683 0.95 12 19 0.00071 0.059 14.3 5.6 2 23 707 728 706 728 0.97 13 19 0.00037 0.031 15.2 0.0 3 23 733 753 731 753 0.96 14 19 0.00049 0.041 14.8 1.7 1 21 758 778 758 783 0.93 15 19 0.34 29 5.8 4.2 2 23 794 816 793 816 0.95 16 19 0.00081 0.067 14.1 0.3 1 23 822 845 822 845 0.96 17 19 2.3e-06 0.00019 22.1 2.4 2 23 850 871 849 871 0.98 18 19 0.0043 0.36 11.8 0.3 2 23 878 900 877 900 0.95 19 19 0.0031 0.26 12.3 0.1 1 23 904 927 904 927 0.94
Sequence Information
- Coding Sequence
- atgcgcgCGACGCCGAAAATGCTTAATGAGGAAGGTGTCATCAACGACTCGGATTTCGACGTACAAAGTGACCGCGGCGATAGAAGCACCCTTACAGAGATCAAGACTCGAAATTCTCTTGATGATTGCTTATATGGAGAGGCTATTCCGACAGTCACTTATGACATTCATTCTGCGACGACAAACACCATATCTACAAAAAAACGTTTATTGACTGTCCTTAGTAAGCCAATACCGATACGTGACGCGACGCATTGGAAACCTGTCCAATTACATGAATTGTACGAGAGATCGCCAACACCAAACATAAAATTTGAAAGTCTAGTTCCATCGAGCAGGAAAAGGGATTGCGACTCGGATTATGAATATGAATCTGAGACTGAATTTCTAGAAACACCTCGTAAAGTGACTGTTCTGGAAAATGATACGCAGCCACTTAAAATACGCGATAGCCCACAAATGGCTATGAATTTTGAATTTGTTCAAAGTCTATCAAGTAGCAAAAATGATATAGACTCTGGACATGAATATTCTGATGCAACGGGCGCTTCCACGAAATGTCAAATACGCGAACTAAACGAGGATTCCACGACAGGCGTCGATCAGAGAGTTGTCAAAAAACCAGGTCGTTCCCGTATGGTTGACCTTCAATTAGAAGATTGGAAAAAACATACCATTAAAGTTTTACAAAACTCATTCGTTTACCCGTTTGCGTACTCTTACAATCGGTATAAATGTTTTGTTTGTCACAAACCATTCCTCGATACATGTCTACTAAAAAAACATGCTACAAAACATACGATCGAGGAAGTGATTTACAGAATGAATAACAAATTCAGAGATATGATTCTAAAAGTGGACGTGACTGATCTCCGCTGCGGCATATGCTGTAATACATGTGACAGTTTGAAAGATTTAAAGTCACATTTACGTGATGCTCATGGAATAGATTTGGACCCTGACTATCAAGATAACTTACTCCCTATCAAATTGGGAGACAAAACATTTCAGTGTGTAATCTGTGAGGAAGTCTGCTCGAATATAAGAAATCTGCTCTCCCATATAAGGCAGCATTTCAGTAACTACAAATGCGAAATTTGCGGGTCCGGGTACATCACAAAGAATACGTTAAAACAACATTTATACATTCACGATACAGGGACTTACAAATGCGAGGTTTGCGACAAAGTATATAGCAGTGCGTACAAAAAGGCAAGACATTTTCGAACATCTCACTTGACCATGGCGAATGAGAAGTGTCCATTTTGTCCGGCAAAAATGTTCTCGTTGTATCAAAAGGCACAACATTTGAGAATTGTCCACAACCGGAGCAAAGGCCTTTATACATGTAACATATGTAAGAAGACATTCGACATAAGATCCGATCTTTTGGAGCACACGCAAAATGATCACTCGCTACAATTTGAGTGTTCGATTTGTCACTCCCAGTTTTATGAAAATTCAAAACTGAAGAAGCATATGTTGGCACATAAAGAAAGGTTCACGTGTGAAACGTGCGGGGCGTCGTACGGCATCAAGATGAACTTAATCAAACACATTCGAAGTCACGATGTCCAGGATAGCAACGTTGATGTTGCGCTCCATGTGAGAGTTCCTCCGGGGAAGTACCGGCGCCATATCTATTCCTACCGCCAGGCGGTAGTGTTCGCATTACTGTGTTCCGTTCCGAAGGGACCTCCGGAAACTCAGAGTTCCTATTTAGAAAACTCAGCACCGGGAAGGAGTTTGCACAAGATTTCGAGAAGTGAACGCGAAAACGCAGCAACTCTTATCGAATTCACTACAATGACGCCGTTTATACACCATTACAGCAAGTTTAGGTGCTTCTATTGTCCCGAAAACTTCAGTGACGTGCAGTTGATGATACACCATTCCAAAGTACACACACCGAAAAGGATAATTATAATGGACAATATTAGTGAAACCCGGGCTGTGGTCAAAGTTGACATATCAGAGTTGAAATGCAGAATATGTAATTTGAAGTGTGCAGAGCTGAAAGATATCAAAGAGCATTTGATGAAGGCGCATAAAAAAGTATTTTATCCAGCCGCTGATGGGCTAACTTGTTACAATTTCAGCAAAAACGGCAGTATGATGACCTGTCATAAATGCGACAAGATTTTCACTTCTTTCCAAATGTTGCACTACCATATGCTGACCCATGAAGGTGTTATTTGTGAATTATGCGGTGTAGGCTTTAGCAGTGCCAAGAGATTGCAAAACCATATGGAAATCCATCAAAATCTGTCTTACGAATGTGATAAATGTAAAAAATTGTTTGCTACTAAAAGCAAACTAAAATATCATCTGGATAGGTCCAAAGCTCACGCAGATGAAATCGATCCATCGAAGGGTTTGAGATGCCCTCACTGTTCGGAACGATTCGTAGAGTATTGTAATAAGCTTACTCATCTGAAGAAAGTTCACGGTGTTACCTTCACGTTCGAGTGTCCAATTTGCAAGGAAATTTTCCCTTCGCGCAGGAGACTGACAGAACACACAACAAAGGTGCATATACAAAATATGAAGTGCGAAATTTGTGGAAAGTGCTACATAAACAGTACATTGTTGAAATATCACATGAGAAGCCACACCCGTGAACGCAACTTAGTTTGCGCTCTCTGCAAAAAGGCGTACATGCAAGAGAAAATGTTGAGAAAGCATGTCAACAAAGTTCATGGGTATCGGTTTATTTGTTTCAAGTGCGGAATGTCTTTTCCGATTAAAGAAGAACTTGTTGCTCATAAACAGGAAGTACATCCTCAATAG
- Protein Sequence
- MRATPKMLNEEGVINDSDFDVQSDRGDRSTLTEIKTRNSLDDCLYGEAIPTVTYDIHSATTNTISTKKRLLTVLSKPIPIRDATHWKPVQLHELYERSPTPNIKFESLVPSSRKRDCDSDYEYESETEFLETPRKVTVLENDTQPLKIRDSPQMAMNFEFVQSLSSSKNDIDSGHEYSDATGASTKCQIRELNEDSTTGVDQRVVKKPGRSRMVDLQLEDWKKHTIKVLQNSFVYPFAYSYNRYKCFVCHKPFLDTCLLKKHATKHTIEEVIYRMNNKFRDMILKVDVTDLRCGICCNTCDSLKDLKSHLRDAHGIDLDPDYQDNLLPIKLGDKTFQCVICEEVCSNIRNLLSHIRQHFSNYKCEICGSGYITKNTLKQHLYIHDTGTYKCEVCDKVYSSAYKKARHFRTSHLTMANEKCPFCPAKMFSLYQKAQHLRIVHNRSKGLYTCNICKKTFDIRSDLLEHTQNDHSLQFECSICHSQFYENSKLKKHMLAHKERFTCETCGASYGIKMNLIKHIRSHDVQDSNVDVALHVRVPPGKYRRHIYSYRQAVVFALLCSVPKGPPETQSSYLENSAPGRSLHKISRSERENAATLIEFTTMTPFIHHYSKFRCFYCPENFSDVQLMIHHSKVHTPKRIIIMDNISETRAVVKVDISELKCRICNLKCAELKDIKEHLMKAHKKVFYPAADGLTCYNFSKNGSMMTCHKCDKIFTSFQMLHYHMLTHEGVICELCGVGFSSAKRLQNHMEIHQNLSYECDKCKKLFATKSKLKYHLDRSKAHADEIDPSKGLRCPHCSERFVEYCNKLTHLKKVHGVTFTFECPICKEIFPSRRRLTEHTTKVHIQNMKCEICGKCYINSTLLKYHMRSHTRERNLVCALCKKAYMQEKMLRKHVNKVHGYRFICFKCGMSFPIKEELVAHKQEVHPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -