Basic Information

Insect: Apeira syringaria
Gene Symbol: -
Assembly: GCA_934045895.1
Location: CAKOGY010000205.1:1046236-1052558[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0024 0.2 12.6 6.5 1 23 136 158 136 158 0.98

2 12 0.0011 0.095 13.6 8.3 1 23 162 184 162 184 0.97

3 12 0.0021 0.18 12.8 5.1 1 23 217 239 217 239 0.99

4 12 6.7e-06 0.00055 20.7 0.7 1 23 248 270 248 270 0.97

5 12 3.3e-07 2.7e-05 24.8 2.0 1 23 276 298 276 298 0.98

6 12 1.9e-05 0.0016 19.2 1.8 3 23 306 326 305 326 0.98

7 12 6.7e-08 5.6e-06 26.9 0.5 1 23 332 354 332 354 0.95

8 12 4.5e-05 0.0037 18.0 2.6 3 23 362 382 361 382 0.99

9 12 4.2e-06 0.00035 21.3 0.2 1 23 388 410 388 410 0.98

10 12 0.4 34 5.6 5.9 3 23 418 438 416 438 0.97

11 12 3.6e-07 3e-05 24.6 2.0 1 23 444 466 444 466 0.99

12 12 0.0016 0.14 13.1 0.3 1 20 472 491 472 494 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0024	0.2	12.6	6.5	1	23	136	158	136	158	0.98
2	12	0.0011	0.095	13.6	8.3	1	23	162	184	162	184	0.97
3	12	0.0021	0.18	12.8	5.1	1	23	217	239	217	239	0.99
4	12	6.7e-06	0.00055	20.7	0.7	1	23	248	270	248	270	0.97
5	12	3.3e-07	2.7e-05	24.8	2.0	1	23	276	298	276	298	0.98
6	12	1.9e-05	0.0016	19.2	1.8	3	23	306	326	305	326	0.98
7	12	6.7e-08	5.6e-06	26.9	0.5	1	23	332	354	332	354	0.95
8	12	4.5e-05	0.0037	18.0	2.6	3	23	362	382	361	382	0.99
9	12	4.2e-06	0.00035	21.3	0.2	1	23	388	410	388	410	0.98
10	12	0.4	34	5.6	5.9	3	23	418	438	416	438	0.97
11	12	3.6e-07	3e-05	24.6	2.0	1	23	444	466	444	466	0.99
12	12	0.0016	0.14	13.1	0.3	1	20	472	491	472	494	0.94

Sequence Information

Coding Sequence: ATGTTGAACACAGATATAGCATCATCATGTAGAACTTGTATGAAAAATGATGACAAGTTGGTCCATTTGTACGAATCGGTGAAAATTGATGAGAACAACAACCTTCAACTCGTTCAATTAGTGATGGAATGTACGACAATACAGATTCTTCAAGATGATGGGTTACCTCAATACATCTGTGAACCATGTACCAGTATACTCCGCATGGCATTCTCATTCCGTCAACAAGCTGCCAAGGCTGAAGAACAATTCAAAAAGCTCCTCAGTGAAGAAGTGAAGCAAGAGATCAAGTTAGAAAATGACCTCAGCTGCATTGACGACTTTGATGATTCTCACCTAGACTTGTCAGACTCAACTAGTGATATTAAAACAGAACATGAAACAACAGATACAAATGATAAAATCTTTAGCTGCAATCACTGTACTAAAACATATACTAAAGAAAAAAAATACCTTAAGCATTTGAATTCACACATATTTAGCTTTCATTGTACTTATTGCAACAAGAGCTTTCATAAAGAAACATCATTGACAAAACACTTATCTAAGCATGAACAAAAGTCTGTATCATGTAATGGTATCAACAAGACTTATGATTCTTACACTACCCTGATTATAAAAAATGAAAATGGTGAAGAGGAAAAGAAATACCAATGTCATGCTTGTGAAATATCATTTTCAAAACACAGATCTTTATTAAGTCATTTAAAAAAGCATGCTCAAGCCAATAACATAACATCTTATATATGTGACACTTGTAGTAAAGAATTTGTATCAAAGGCATTATTAAAAAGACATTTGAAACTGCATTTTAATGAACAACCATACAGTTGTACAAAGTGTGTAAAGACTTACTCAAGGAAAGATCAGTTGAAGGCTCATATGAACATGCATAAAGAATCAAAGCCGAATATATGTCCCCATTGTAATAAAGCATTTGCACAAGTGTGCAGCCTCAAAGATCACATTCGAATCCACACAAAAGAGACCCCATTCCTTTGCTCGGAGTGTGGCAAGGGCTTTGCGAATAGCTCGAACCTGCGGCAACATATGCTGCGGCACACCGGCGCCAAGCCTCACGGCTGCAAGCTCTGCCCCAAGAGATTCTGCACCAAAGGGCAGATGACTTCTCATATGGCGACGCACGCGGGCCTGCACCCGTACAAGTGCGACAAGTGCGGCGCCGCCTTCACCAAACCCAACTCGCTCAAGAAGCACGCCCTCATACACACCGGCCACCGCCCCTTCGGCTGCGACACTTGTCTCATGAGATTCACATGCAAAGACCATCTAAAGCGTCACAGCCGCATCCACACTGGAGAGAAACCGTACAAGTGTAAATTCTGCGAACGCGCCTTCACACAGAGCAACGATCTCGTCAAACATATGCGTTCGCACGTAGGACAGAATATTTACACGTGTACTGTATGCAGCGCTGGGTTCCGTCTCCAAAGCGAACTGAAACAGCACTACCCGATACACTTCTGCGGAGACGATCCAGCTCTCAAGAGCTTACTCAACATTGAGTACAAGCAAGAGCAGAACAAGTCAGACCAAAAAAAATTGTCAGAACAGAGAATACTGTCCGAAGAAAGTACAGGGCCAGAACAAAGTATTTTATCCGATCAGAAATTGGATGTAAAAGAAGTACCTGACAAGTACTTGATAACCATCAACAACGTTAATAATATGGTTGAAATTAATATAGAAGCTGAGCCCTGA
Protein Sequence: MLNTDIASSCRTCMKNDDKLVHLYESVKIDENNNLQLVQLVMECTTIQILQDDGLPQYICEPCTSILRMAFSFRQQAAKAEEQFKKLLSEEVKQEIKLENDLSCIDDFDDSHLDLSDSTSDIKTEHETTDTNDKIFSCNHCTKTYTKEKKYLKHLNSHIFSFHCTYCNKSFHKETSLTKHLSKHEQKSVSCNGINKTYDSYTTLIIKNENGEEEKKYQCHACEISFSKHRSLLSHLKKHAQANNITSYICDTCSKEFVSKALLKRHLKLHFNEQPYSCTKCVKTYSRKDQLKAHMNMHKESKPNICPHCNKAFAQVCSLKDHIRIHTKETPFLCSECGKGFANSSNLRQHMLRHTGAKPHGCKLCPKRFCTKGQMTSHMATHAGLHPYKCDKCGAAFTKPNSLKKHALIHTGHRPFGCDTCLMRFTCKDHLKRHSRIHTGEKPYKCKFCERAFTQSNDLVKHMRSHVGQNIYTCTVCSAGFRLQSELKQHYPIHFCGDDPALKSLLNIEYKQEQNKSDQKKLSEQRILSEESTGPEQSILSDQKLDVKEVPDKYLITINNVNNMVEINIEAEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -