Asyr018312.2
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000267.1:40012-51760[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.011 0.92 10.5 0.9 3 23 652 673 651 673 0.90 2 24 2.2 1.8e+02 3.3 1.5 4 23 1034 1055 1032 1055 0.84 3 24 0.036 3 8.9 0.6 1 21 1060 1080 1060 1081 0.96 4 24 5.6 4.7e+02 2.0 0.2 1 23 1122 1145 1122 1145 0.89 5 24 0.00055 0.045 14.6 1.4 2 21 1155 1174 1154 1175 0.94 6 24 0.4 33 5.6 0.5 2 23 1183 1205 1182 1205 0.93 7 24 0.017 1.4 10.0 2.3 3 23 1226 1247 1224 1247 0.94 8 24 0.0012 0.097 13.6 0.4 1 23 1253 1276 1253 1276 0.95 9 24 0.11 9.4 7.4 0.0 1 23 1302 1325 1302 1325 0.90 10 24 0.0049 0.41 11.6 3.5 1 23 1330 1352 1330 1352 0.97 11 24 0.0064 0.53 11.3 1.0 1 23 1358 1381 1358 1381 0.97 12 24 0.0026 0.21 12.5 0.9 1 23 1394 1416 1394 1416 0.97 13 24 0.00016 0.013 16.3 1.8 1 23 1465 1488 1465 1488 0.97 14 24 0.053 4.4 8.4 2.8 1 23 1550 1573 1550 1573 0.95 15 24 0.0018 0.15 13.0 1.5 2 23 1599 1621 1598 1621 0.95 16 24 0.078 6.5 7.9 0.1 2 23 1627 1649 1626 1649 0.93 17 24 0.0089 0.74 10.8 0.2 1 21 1694 1714 1694 1715 0.95 18 24 0.0011 0.088 13.7 0.5 1 23 1725 1747 1725 1747 0.93 19 24 0.0001 0.0084 16.9 0.3 2 23 1837 1859 1837 1859 0.93 20 24 3.9e-07 3.2e-05 24.5 1.3 3 23 1866 1886 1865 1886 0.98 21 24 0.019 1.6 9.8 0.1 1 23 1904 1927 1904 1927 0.95 22 24 0.19 16 6.6 0.0 1 23 1948 1970 1948 1970 0.98 23 24 0.025 2.1 9.4 0.6 1 23 1976 1999 1976 1999 0.95 24 24 0.00023 0.019 15.8 0.4 1 23 2007 2030 2007 2030 0.96
Sequence Information
- Coding Sequence
- ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAAATACTGCCGATTTTCCCTACCACCAGTTTGGATGACTCGGAACCCCCCGTCCTTGTCTCGAAAATCAAGGATTGTGTGTCGGTACAGATAACCGAAAATGACGAACTGCCGACGAATGTCTGTAAAAAATGCATGGATAATGTCAACAACTGGTATATATTCAAGTCTGTATGTGAAAAGACACAAAACAAACTACAGTCTCTGATTAAAAAGGATGGCAGCCTACTAGAAGAGGTAAAAATAAAGAGTGAACCATTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATTCTTCATACCCAATCAATGAGAATACCACCTCTTCAAATAAGCTACAGCCAGAAGGACCACCCATTTTGGCTTCATTGGGACTTACACCGAGAAGTGATAAGACATGTGTGGATCCCCGAATGGACTGGCATCGGGTCCATGCAATACTGGACATGGTACAAGAAAATGATATTATTGATTCACTCCAGGCCACAGAAGAGAGTGATACACTGCACCATTCTGATCATGACTCTGAGTCAGAAGGTGAACTGTTAAAGGATGTGGACGATACTTACATTCACTGCGAAACTGGTTACAAATGCAGAGACAACAGCATTATTTCCAAATCGCCTCATGTATCAGAGCAAGCCAGAATTGACGCTGTCAAACTAAGAAAACATAAAGTCACTATGAAACATTGTCCTCGACCTAAAAACGCGTGGCAATTACTGATCAGTGACGATCTACTTGAGCTCATAGTTACGTCTACCAACGAGAATATAATGAGAAATAAAAAATATTCGAAACCCACAAATGCCAATGAAATCAAATCTCTGATTGGCGTCTTGTACCTACACGGAATAATGAGATCAACCCACCTGAAGCACAGTGATCTTTGGGACAGGTATTGTGGATTACCATGCATTAATAAAGCAATGACTTTGGACCGTTTCAAATTTCTTCTTCAAAACTTGTGTTTCGATTCAAGAACTGAAAATTCATATATCCAGTTCGATACAATGAAGCGAATACGTAAAGTATTCGAAATATTTGCCATGAATTGTAGGACGGCCTATGATATTGAAACAGTCGCCGTTGTAGACGAGATTGTTGTGCCAGTTTATGGACCTTGTCCCTTTCGATACATAATGGATAAGAAATCACTGAAATGTGGCATTAAAATGGTGCTGCTGGTCGACCCAACTAACTTCTATGTGAGTAACTTGGACGTGATAACCGACCCATATTTTGGAGCAGAAGAAATTGTCAAGAAAATTACTCAGCATTTGTGCGGAAGCGGGAGAACTATTGTCATGGACAGTTGGTACTTTTCAAAGCAGTTAATGACTACACTAAAGACTTATGACCTTTTTACAGTTGCCGCATTGAACCCACATAATAATAGCATACCACCTCTATTTCTGTCCAAGTACAGAAAAACTTGTACATTAATGTCTGGATTCTATGATAAAGCAGTTTCACTTACTTCCTTTGTAGATTCTAAATCTAAGTCCATAAATGTTATATCCAATGATCCATGGTTTTACAAAAGAAGTCCGAATATCAACCATGTGACTGCTGTATCGGTGTATAAAAAAAATCAGTCAGCAGTGGAAGTGCTTGATGTGTTAATGCATTATTACACGACTATGCAACATACAAATGATTGGACACTTCCATTGTTCTTTACATTGTTAAATATTGCTTCAGTCAATGCCCAGGGGTTGGAGAGCGAGAATAATGAAGATGAAGAAGAAACTTATGAAGAAGACGTAAACGAGCAAAACCACCCTTCTGAACCCGCGAAGGTGCCACAAATGCCCGAAGTTTCCATCACTGTGATGCGGCCTACTGGTGAGACCCTACATGCGCGTCAAGGGATACAACAGCTTGCTTCCAAAGACTGTCTCATCTGTGGACGCTCGTACAGATACTCTCACAATGCCCGGAGGCACGAACTAGCATCACACAGCTTCGACCGCTACACAAACAAAGTAACAAACAAGAAATCACATTATTCACGCATGACACCTAAACTGAGACCTAATCCGTTCAATCCTAAAGCAAGGCTGTTGCCTAACCCTATCAGCCACAAACTCCAATTCATGCCCAAAACTGTTTCCAACAAAATAATACCACTGAAAGCTGTGCCACCGAAACCAATACCCATTAGAGCTTCTAAAGTGACACAAAATAATTTACCATATCCGCTGCGCATAAAAGCGCTCAAAGACTTACAGATAAAGAAAAAAGAACCGCAAATTTTGAAAACGTTGCTCACTGCGAAACCCGAAGTGCTAGTTGCTGAGCCGGAGATTTTGAATTCTGGCCCAGAAAGTCCGGAAACCTTGATATCTGAGCCAGAGATCGCGTCCTTCCAGGTAGAAGCTATTCTCTCGGAGCCTACCGAGTATGATCAAAATCAAGAGGATGGTGAAGTCACATACTCAACAATGAATGCACAAGAACATAATCATAATCAAAATTACGATACTGTTGACATGGAGTCTGAACACGAGATTGAAATTGCCCGTCAGCAGGAACAAGAAGACCAAATTATGGAGAATAATGATGAAAATTTACATCTTGAAGAAAACCATATTGATGACGCCGAGAAGCTAGGTGAGAGCGACAATGAGATTAATGACACTGGTGACAGTCAAGAGCATCATATGAAGCTGGACGAGGCTCCCGATGATAATATGGAGCTGGACGAGACCCATGATGCCCACATAGATGATGGATGCAAAGGTGAGGATATCATGTATGGAGAAAACGATGAGCAGGAGGTCAATCCTGAAGCGGATGAAAATGACGATGAAGAAGCGATTCTACCGGCACCCGTTGTTGAATTGAATGAAACACAAAATAATTCATGTAGTGAATTGAATGAAGAAGATGAGGAGTTAGACGAATCCGCCGATATCAATGAAACTGCTGAAAACGAACCAAAGATGCTTGATCCTGACAAAACATATGTCACAAAAGCTCAACGGGATTTCATTTCCAAATTCCGTGATGTTATACAACAAATCAACACAAAGCGATGTCTCTGTTGCGATAAAACGTACCCGCGCAGGAAAGCGGTTGTTCAGCATTTACAGAAAAATGGACACAAAGTTCCTAAACACACTTGCTACAACTGTGTGATCACATTTACTCATATTGGTGCTCTGCTCAGTCACATGAGACAGAATTCTTGCACAGATCTATGGAAAATTATCTACGATGAGAATGGTATATCTGAGGATATGGTTCTTGAAAATGAGCCTAAAGTAAAAGTACAACCGAAGGATATTTTCAATGCCCGATCCTACGCCTGCCGACTTTGTCCGGCAAAATTCCAATTGAAGCAATCTATAATGAAGCATGTATTGGACGTACATGAAGACGGGCAATCAGCAATACCCCTCAGTTGTGTCCACTGCCAAACTAGGTTCAAAGACAGAACTATGCTCAAGAAACACATTCGCATCGGCGAATGTACAGTTTACATACATTGCGACATGTGTTCTGAACAATTTTCTAACATGCAAGACTTCAGTGATCACGCTTTATCAGCACATGCTGACCACTTTGAGAACCCAGATAATCAAAACAAATGTATCGACGGTAGAGCTACAGACTGTTCAATTTGCGAAAAGAAATGTAGCAATTACTTGAACCTTGTAAAACATTTAAAGTTTGTGCATAATGAAGATCGACCGCATTACTGTCAAAATTGCGACGCTAAATTTGAACAAGCTGCTGACCTTAACAATCACATTTATGTGGAGCATTCATTTCAAGCCCTGGGATTGCAACCTGTTGCACCAGACATGTCTTTGGTTAAAGAAGAAGCTGAAGAGTATCATTATTCTTGCACTGAATGCAACGCGATATTCGAAACTGTCGACGCTTGGACAGATCATCAAGTGGCAGAGCACAATCAAGTCGCCCATCATTGCGACCAGTGCGACAAGAAGTTCTTGCGACCTTCTGAACTAGCTGAACACAAAAATACCCACTTGAGAGTTAAATTCTATCCTTGCAGCGTATGCCCGAATTCATACAGCACTCCTCAAAAGTTGTCTGACCATGTTCAGAAATGTCATCCTGGAGTGGGTAATCTATCCAATACAGATACAGAATTTTTCTGTGATATATGCATTAGAGCATTCAAAAGTCGCCAGGCATTTTCGAATCACATGCGTATTCATGCAAAGGTACCAACTACTAACAGAAAACCGGGTGAACCTAAAGGATTTGATCCACGCATTATCGGAAAGCCTATAAAACAATATACCATGGTGCAACCTAATTTCGTCAACTACAAGCCAAATACTAATGTTCCCAACGCGCCTTACTCTTGTGATATTTGCGGCAAAGGTTTCATGCATAAAAAAAATATATGGAAACATAAGAAAGTCTTGCATGCGGATATAATTAATGATAGAAATGACAGCGAAGACAACACCATGCATGCTTCGACAGAAGATGATGATTACAATCCTGATGAAAATGGCGCTTTATCCACACCCCAGTTCAACAGCTTTAACTTTTCCAACTTTTCTAATAACATTACGCCACAACTGGCGCAACCTCAGCCGGAAATCCTACATACATGTGAGTTGTGTTTGAAACGATTCCCGCTTAGAACTAGTTTATTGAAGCATAAACGCGCTAAGCACGGTATTGTTAACCCCGGTGCGAGCAGTAGCAACGAAACACCAATGCTCTCGACGCCGGGGGAAGGCGGTCGATCTAGTTGCACAATTTGTAAAATTACTTTTGCTGACAAGAAATCTTACTATCGACATAGAAAGAATGTTCACAAAACTGCCACGCAAATGTGCAAGATTTGCGGCAAACCTCTCAATTCTACTTTGGAGCTGTATGAACATCTCAAAGCTGCGCACGCTCGGGAATTGCTGGGATATAACGCGAATCAAGGTTCGAATAAATCCCAACCAGACGTGTCTCAAGATCTAGATGTTGATTATGATAATGAGCCAGATGTAGCCGATCCAGGGGTGGACTATCAAGCTCGGTATCCATGCGACACCTGCGGAAAACAATTTGTAGGTCTTCTGGCGTTACAGAACCACCAATGTATAAACCAAATTCCCTCGCAACCTCAGACTTTCGACTGTGAAATATGCCACAAAAGTTACTCTTCCATTGCTGCTTTGAAGAGTCATCGCGGTTGGCACTTGCGCTCTCCCGATGGTAAAGCGGCTGCGAACAATAGCGGTCTTTGGATGCCTCAGCACAAAGTGACAACGAAAGTCAGTAAGCACGAGATTGTGGACGCAGTTCAGTTGGCTCGCGTTTCGCATTCGACTCCTGTCGCTCCCGTACCGAGCAAAAGGAGACTACCTCCAGAAGTAGAAGTGACCGTTGTCAATCCGAATAAAAAGATGCGTTCGGACGACTCCGTAGAAATGGACCAGCAGAACAATGATGCCTTAGAAGGGAGGTACTGCACAATTTGCGACAAAGAGTTCACCAAGCGCGCCGCTTACCAGCGTCACATGGACGAGGTCCACCAACCGAATTCTGTATTTTGTCCAATATGTGATAGAAGTTTCACGAGAAAATCGACGCTTCTTGTGCATATGAAGAAGCACTACGAAGGTGGTGAGGGTACATCGGCCGCCTCACAGATCGATGACGAGGGTTACGCGTGCGGTGTATGCGATGCGGTGTTCGATACTGAAAAAGCTTTGAGGGGTCACCATGCTAGAGCTCATGCGGATGATTCTGCAGAATCTGAGGACGAAGGAAATGCCCCCGCTGCGCCACCGGGTGAGTTCACTTGCGGCCAGTGTGGGGACGGGGTGGCGAGTCCGCGAGATTTACTCGCTCACCGTTCGATGCACGCAACTCCTACCAAATTCTTCTGCAACATTTGCAAGGTCTACTTTGCTCGAGCGTTGGACCTCTCGTCGCACACTCGCGCGCGACACGCCGATAACGAAAAGGTTTTCTTCCCATGTGCCATGTGTGACCGCTTCTATATGAACAAAAAGAGTTTACAAAGACACATTGAGATGGCGCATTGA
- Protein Sequence
- MNVNYDRVCRLCLSSRGEILPIFPTTSLDDSEPPVLVSKIKDCVSVQITENDELPTNVCKKCMDNVNNWYIFKSVCEKTQNKLQSLIKKDGSLLEEVKIKSEPLSDEAYDDGVVIDSSYPINENTTSSNKLQPEGPPILASLGLTPRSDKTCVDPRMDWHRVHAILDMVQENDIIDSLQATEESDTLHHSDHDSESEGELLKDVDDTYIHCETGYKCRDNSIISKSPHVSEQARIDAVKLRKHKVTMKHCPRPKNAWQLLISDDLLELIVTSTNENIMRNKKYSKPTNANEIKSLIGVLYLHGIMRSTHLKHSDLWDRYCGLPCINKAMTLDRFKFLLQNLCFDSRTENSYIQFDTMKRIRKVFEIFAMNCRTAYDIETVAVVDEIVVPVYGPCPFRYIMDKKSLKCGIKMVLLVDPTNFYVSNLDVITDPYFGAEEIVKKITQHLCGSGRTIVMDSWYFSKQLMTTLKTYDLFTVAALNPHNNSIPPLFLSKYRKTCTLMSGFYDKAVSLTSFVDSKSKSINVISNDPWFYKRSPNINHVTAVSVYKKNQSAVEVLDVLMHYYTTMQHTNDWTLPLFFTLLNIASVNAQGLESENNEDEEETYEEDVNEQNHPSEPAKVPQMPEVSITVMRPTGETLHARQGIQQLASKDCLICGRSYRYSHNARRHELASHSFDRYTNKVTNKKSHYSRMTPKLRPNPFNPKARLLPNPISHKLQFMPKTVSNKIIPLKAVPPKPIPIRASKVTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTAKPEVLVAEPEILNSGPESPETLISEPEIASFQVEAILSEPTEYDQNQEDGEVTYSTMNAQEHNHNQNYDTVDMESEHEIEIARQQEQEDQIMENNDENLHLEENHIDDAEKLGESDNEINDTGDSQEHHMKLDEAPDDNMELDETHDAHIDDGCKGEDIMYGENDEQEVNPEADENDDEEAILPAPVVELNETQNNSCSELNEEDEELDESADINETAENEPKMLDPDKTYVTKAQRDFISKFRDVIQQINTKRCLCCDKTYPRRKAVVQHLQKNGHKVPKHTCYNCVITFTHIGALLSHMRQNSCTDLWKIIYDENGISEDMVLENEPKVKVQPKDIFNARSYACRLCPAKFQLKQSIMKHVLDVHEDGQSAIPLSCVHCQTRFKDRTMLKKHIRIGECTVYIHCDMCSEQFSNMQDFSDHALSAHADHFENPDNQNKCIDGRATDCSICEKKCSNYLNLVKHLKFVHNEDRPHYCQNCDAKFEQAADLNNHIYVEHSFQALGLQPVAPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCDKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSDHVQKCHPGVGNLSNTDTEFFCDICIRAFKSRQAFSNHMRIHAKVPTTNRKPGEPKGFDPRIIGKPIKQYTMVQPNFVNYKPNTNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADIINDRNDSEDNTMHASTEDDDYNPDENGALSTPQFNSFNFSNFSNNITPQLAQPQPEILHTCELCLKRFPLRTSLLKHKRAKHGIVNPGASSSNETPMLSTPGEGGRSSCTICKITFADKKSYYRHRKNVHKTATQMCKICGKPLNSTLELYEHLKAAHARELLGYNANQGSNKSQPDVSQDLDVDYDNEPDVADPGVDYQARYPCDTCGKQFVGLLALQNHQCINQIPSQPQTFDCEICHKSYSSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTTKVSKHEIVDAVQLARVSHSTPVAPVPSKRRLPPEVEVTVVNPNKKMRSDDSVEMDQQNNDALEGRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPICDRSFTRKSTLLVHMKKHYEGGEGTSAASQIDDEGYACGVCDAVFDTEKALRGHHARAHADDSAESEDEGNAPAAPPGEFTCGQCGDGVASPRDLLAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -