Asyr020344.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000324.1:11665-22452[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0079 0.66 11.0 0.0 2 23 247 268 246 268 0.95 2 23 0.16 13 6.9 6.2 1 23 288 310 288 310 0.98 3 23 0.00014 0.012 16.5 1.7 1 23 334 356 334 356 0.96 4 23 0.3 25 6.0 0.4 5 23 364 383 361 383 0.94 5 23 1.8e-05 0.0015 19.3 0.7 1 23 465 487 465 487 0.98 6 23 0.017 1.4 9.9 0.8 1 23 492 514 492 514 0.93 7 23 8.1e-05 0.0067 17.2 2.8 1 23 520 542 520 542 0.97 8 23 4.9e-06 0.00041 21.1 0.5 1 23 548 570 548 570 0.98 9 23 0.00072 0.059 14.3 1.2 1 23 576 598 576 598 0.97 10 23 3.6e-05 0.003 18.3 0.1 1 23 604 626 604 626 0.94 11 23 0.00026 0.022 15.6 1.1 1 23 632 654 632 654 0.98 12 23 8.2e-06 0.00068 20.4 3.2 1 23 659 682 659 682 0.98 13 23 4.5e-07 3.8e-05 24.3 5.3 1 23 688 710 688 710 0.98 14 23 2.5e-05 0.0021 18.8 0.3 2 23 716 738 715 738 0.95 15 23 3.9 3.2e+02 2.5 0.3 1 10 744 753 744 767 0.88 16 23 0.00047 0.039 14.8 6.8 1 23 775 798 775 798 0.93 17 23 0.47 39 5.4 1.0 2 19 802 819 801 821 0.79 18 23 0.005 0.42 11.6 0.4 2 23 826 848 825 848 0.95 19 23 1 85 4.3 1.5 1 23 857 880 857 880 0.92 20 23 0.71 59 4.8 0.5 1 20 885 904 885 904 0.95 21 23 3 2.5e+02 2.9 0.5 2 17 913 928 912 933 0.84 22 23 7.9 6.5e+02 1.5 1.9 2 23 942 962 941 962 0.93 23 23 0.00023 0.019 15.8 0.2 2 23 968 990 967 990 0.96
Sequence Information
- Coding Sequence
- ATGGCACTATGGACAAAAGACACCATTGAAAAAACTGAATTTATACAAAGCAATGATACCACCTTTGTACAAAATGATAAAGAAGATCAAGATGCCATTATAGAACCATATCTTACTACAAATGAAAATAACACCATTACACAAAATACAAATAGAGACCACAACATAATTGACACACAAAATAATTCAATACAACATAGTGCCATCCAAGATCTACAAAAGACCATGGAGGCAGGTCACATCATAAAACCATGTGATAGAGGAGAACAAACCAATAACGTAGAACATAATGGTGGTATGCAACATAGTACGATAAATACTATCTGGGAACAAAATGCTTTTACAGATCAAACCACTATGGTAGAAAGTACCAGTAAAGAATGTAATGATACTACCCACCAACATTTAGCAATAAGTCATAATGACATTGTAGAAAAAGGCCCCATTATAAAACAAAATGATATATTAAAGGAAAGAGCTACTTTAGCATTGGATGATTTAGTGAAACAATGTGATACAATGGAAGAATGTAACCCTGTAAATTGTAATGATGTCTTCCAACATACCAACACAATGGGTCATAATGAGACTACAGAAAAAGATGCCATCACAGATAAACATGCCATAATGGAAAAAAGTGGTATTTTAGAACTTAATGACACCATGAATCAGCAATGTGACACTATGAAACAAAGTGATACTAAGAAACATATGATCACTATAGAAAAAAATGATTTACCATGCCCAGCATGTTCAAAAACATTTTCAATACAAGCTGATCTGGATGACCATTTGAATTGGCACTCCACACAGGTAGAGCAATTACAAAATTCATTTGTGAAATTGCGCCGTGTCAAGATTTATCCATGCCATTTATGCCAGAGCTGTTTCCTGGATCATAGTGCGCTAAAAGATCATCTGAAGAAACACATTCCGATGGAGATCTCACGACGTTCTCAAAACAACAACAACAACAACAACAACCCACTGGATAAGCCATACAAATGTGACTACTGCAACTGGTGTTTTGTATTGAGAAGCACTCTGGAAACCCACTCGATCATCCACAAGCCGTTCCCACATGCGTGTGACTGCGGTATTGGTTTCTACAAGAAACAAGACCTGGAAGGCCATCGTAAACTAGTACATCCCAACGCGCCAAAAAATCCAACAGTGCCTAGACTCAAGCCAGAATCATTCCAAATTAAACCACAATCGGACTCAGAACCCGGCTCAGAATCCGACAAAAATGAAGACGATTACAAACCTAGCAAAATCAGACCAAAATTGAAGGCCACGGTATCGTACATCCAACCTAAGGGCGCCAAAAAGAGTCGGACGTATACAAAGAGCAAAGACAATTTACCCATTAAATTAGACACTGCAGGTAGATATAAATGTCCACTTTGTCCAAAAACGTTTTCGCATGCGGAAGGTGTAAAGACACATTTGTACGTGCACATCGGATCTAAGCACAAGTGCGATGAATGCCCGAGGGAATTCCCAAGCCAAGCGATCCTATCGAAGCACAAGGATCAACATGCGGGCATCAAACGTTTCTCCTGCACCGTCTGCAACAAAAAGTTTACCGCTAAATCCCATGTAAAAACTCACATGGTAATTCACACAAAAGAGAAGCCGTTCCCGTGCAATCTGTGCCCGAAGAGATTCACACAGAGCGGTACCCTCACACTTCACTTATTGCGGCACACCGGCAAGAAAGATCACGTGTGTGACATTTGCCAAAAGCGCTTTTATACGGAGGACGTTTTGGATCGACATTCGCGTGTTCATACTGGATTGAAGCCTTATGACTGCAAGTACTGTGGAAAGGCGTTCGCGGATCCTTCCGCTCGTCGTCGGCACGAAGTGATTCACGAAGGCACCAAGCCGCATCGCTGTACGACCTGTCCGAGCGCCTTCTCCGATTATAGTGCCCTCGTGGCCCACAAGAGGCGCCACGAGGGCATCCGCTATACCTGCCCACTCTGCGGCAAGGTCTTCAATACACAATACAACCGTACCACACACCACAAACGCGTGCACATGGCAGGAGAAAAATACGAGTGCGACCACTGCGGTAAAAGTTTCAAAACGAAATCTTATCTCCATGTGCATATTAAAAATCACTTCCCCGAATTTGTGAAGTGCGAAATCTGCGACAAAATCCTCAGAAATAAATCTAGCCTTAATAATCATCTAATGCAAGTCCACATTAAAAATTTTAAGTATGTGTGTGAATTTTGCGGTCTCAGGTTCTTACACGGTACCGTCAAAGATGCTCATATAAAGAGGGTGCATGATAACTTTAGGGAGTTGAAATATGAATGCGACTACTGCCATAAGTGTTTCTACACTAAGGATTATGTACGGAAACATATAGTGTATAAACATTTAGGAATAGTGTGTAAATTGTGCAATAAAAGATTCGACTGCAGCGCCCTATTGAAACTGCATAATTCCGAGGGATGCATACAGTGTCCAGTGTGTTTTGTCAAGTTTGTCGATAATAGTAAAATGAAGGACCATTACAATCTTTACCATATTCCTAAAAGTGAACAGCAGATGCACGATTGTGAATTGTGCTGCAAGCAGTATCCGTCAAAGGTCGGTTTGTCGCGCCACGTACAAGGCGTACACTGTAAAACTAAATATAGTTGTGCGCACTGCACTACAACGGTGTTTAGCAGAACCAATATCCGCGATCATATTTGGGACAAGCACATGATAAGCCTTTACTGCGATGTCTGCTTGAAGCGGTTTTACAGCGAAGCTGAGTTCCGTTTCCACAAGAGCAGACCCTGTGTAGCGAAAGAGAAGGTGAAGTGTCAGACATGTGAAAAGATGATTCCTTGTAAATCGTTATCTAGCCATATGCTGCAGCACGCTCCGAAAAACTTAGAATGTGATATGTGCGGCGTTAAGTACGCATATAAACAGTCTATGTGGAGACATATGCGGTCTGCTCACGGGTTTTAG
- Protein Sequence
- MALWTKDTIEKTEFIQSNDTTFVQNDKEDQDAIIEPYLTTNENNTITQNTNRDHNIIDTQNNSIQHSAIQDLQKTMEAGHIIKPCDRGEQTNNVEHNGGMQHSTINTIWEQNAFTDQTTMVESTSKECNDTTHQHLAISHNDIVEKGPIIKQNDILKERATLALDDLVKQCDTMEECNPVNCNDVFQHTNTMGHNETTEKDAITDKHAIMEKSGILELNDTMNQQCDTMKQSDTKKHMITIEKNDLPCPACSKTFSIQADLDDHLNWHSTQVEQLQNSFVKLRRVKIYPCHLCQSCFLDHSALKDHLKKHIPMEISRRSQNNNNNNNNPLDKPYKCDYCNWCFVLRSTLETHSIIHKPFPHACDCGIGFYKKQDLEGHRKLVHPNAPKNPTVPRLKPESFQIKPQSDSEPGSESDKNEDDYKPSKIRPKLKATVSYIQPKGAKKSRTYTKSKDNLPIKLDTAGRYKCPLCPKTFSHAEGVKTHLYVHIGSKHKCDECPREFPSQAILSKHKDQHAGIKRFSCTVCNKKFTAKSHVKTHMVIHTKEKPFPCNLCPKRFTQSGTLTLHLLRHTGKKDHVCDICQKRFYTEDVLDRHSRVHTGLKPYDCKYCGKAFADPSARRRHEVIHEGTKPHRCTTCPSAFSDYSALVAHKRRHEGIRYTCPLCGKVFNTQYNRTTHHKRVHMAGEKYECDHCGKSFKTKSYLHVHIKNHFPEFVKCEICDKILRNKSSLNNHLMQVHIKNFKYVCEFCGLRFLHGTVKDAHIKRVHDNFRELKYECDYCHKCFYTKDYVRKHIVYKHLGIVCKLCNKRFDCSALLKLHNSEGCIQCPVCFVKFVDNSKMKDHYNLYHIPKSEQQMHDCELCCKQYPSKVGLSRHVQGVHCKTKYSCAHCTTTVFSRTNIRDHIWDKHMISLYCDVCLKRFYSEAEFRFHKSRPCVAKEKVKCQTCEKMIPCKSLSSHMLQHAPKNLECDMCGVKYAYKQSMWRHMRSAHGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -