Asyr008256.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000081.1:1242043-1244355[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.6e-05 0.0013 19.5 5.8 1 23 6 29 6 29 0.94 2 19 0.00061 0.05 14.5 0.3 2 23 35 57 34 57 0.95 3 19 1.5e-05 0.0013 19.5 0.2 2 23 66 88 66 88 0.97 4 19 2.3e-06 0.00019 22.1 1.2 2 23 97 119 96 119 0.95 5 19 1.7e-05 0.0014 19.4 1.7 2 23 127 149 127 149 0.95 6 19 1.6e-06 0.00014 22.6 2.0 2 23 157 179 156 179 0.96 7 19 3.6e-07 3e-05 24.6 3.8 1 23 185 208 185 208 0.98 8 19 0.0018 0.15 13.0 0.4 3 23 243 264 242 264 0.96 9 19 0.0032 0.27 12.2 0.9 1 23 293 316 293 316 0.98 10 19 0.26 21 6.2 1.6 2 21 324 343 323 344 0.93 11 19 0.27 22 6.2 1.0 2 23 353 375 353 375 0.89 12 19 0.013 1.1 10.3 6.0 1 23 398 421 398 421 0.97 13 19 0.00011 0.0089 16.9 0.7 2 23 428 450 427 450 0.96 14 19 0.0001 0.0083 17.0 1.9 2 23 457 479 456 479 0.94 15 19 0.00023 0.019 15.8 2.2 1 23 485 508 485 508 0.98 16 19 0.14 11 7.1 5.0 2 23 516 538 516 538 0.95 17 19 0.00043 0.036 15.0 0.2 1 23 545 568 545 568 0.96 18 19 0.047 3.9 8.5 0.6 1 23 575 598 575 598 0.87 19 19 0.00068 0.057 14.3 3.0 3 23 613 634 612 634 0.93
Sequence Information
- Coding Sequence
- ATGTCTCAAGGGGACTTTGTTTGTGACTACTGCAGTCGTTCCTTTACGAGGAAACACAATCTTCAAACTCATATAGATAACTGTCATGTGAACTCTGCTTGCTACTGTGAGATATGTGACCAAAAATTTGGAAGCCCTGCCGGCTTACAACTACATCTCTCACGAGGTCACAACAGATATGGCCAGTCGTATCCGGAATGCGATGTGTGTGGACGAATATTCACGAGAAAACAAAACATTATGTCCCATATGATCACAGTACATTTACAAGGCATAGGACCTGAAATTCGATGTCGAATATGTTGGAAAACATTCACAACTGAGAGAAATTTGAAGAGACACATCAAGTTGTTACATAACCCTGATTTGGAATATCCAACTTGTGATGAATGCCATAAAGCTTTTAAAAGCAAGCATTCTCTCGTCGCGCACATACAAGCCGCGCACAATGCAAGTGATAGAACTATCAAATGTCACATGTGTGATAAAATATATACCAATAATAGAAATTTGAAACGGCATATTGAAATGCTTCATGGTGAAAAAGAGGATCATAGATGTCATATTTGCCCCAAAGTTTACACATCTAACCAGAGTCTGAAGCGTCATATAAGGACAGCACACAATTCAGACGAAGACAGCTTACAATGCGAAATCAAATTGATTGAATCCGAAATTGCTGTGATCAGCCATGATGACTCTACTGATTCTGACGATGCCATATTATGCAATGTTTGCAACAGGGATTTCAGTGAAGAAACTCAACTAAGGCAACATGTCAAACTGGAGCATACGTTCGAGGCATTCTACGATTACTGTCGAAACTTCTTACAGAAACAAGCGAACAAAGATCAGCCTGCGGACAAGCAGATGATCTACAAATGTGAATTCTGCTTAACGGCTTACTTTAATGTCTACGAATTGAAAGACCACATGAAAGTGAATCACGATACAGAATACAACTTGTCCACTTGTAATGTGTGCTTCTCCAAGTTTTACAGTAAAGAAAGTCTCTTTGAACATAAAAAGTTTTGTCTTCCACCTCCCGATGTCAATGTCTGCAGTCATTGTGATAAACTATTCAGCGAAATTGCAAGTTTAGAATTTCACACGAAAATTTTTCATCCTCAAGCGCAACTTGCCGATTCCAGGATTACTTCGACAAAATGTGATATCTCAGATCTGACCTCTTTCAAATGCGAGCACTGTTCGCGTATCTACTACAGCGATAGGTCTCTAAAACATCATATTAAACTCAAACACAGCACAGATGAGGTAGTCGAATGTGGATACTGCAACAAAATATGCAACAACAAATATTATCTCGCTTCCCATATCAAAATCGTTCACAGCATTGTCGATTTGTCCAAATGCGATTATTGCGATAAACTTTTTAAATCGAAACGCAACATTCGTCGACACATTGAGTATACTCACATGGGGATGCAAAGATATAAATGCGTTGAATGCGAAACGCTTTTCAAAGAAAAACGGAGTCTGCGCAAGCATGTCAGGACTAAGCATCCCAACTCGGCTTCATTCCCTCAATGCCATATTTGCCGCAAAAGATTCGAGTCCGCTAAATCTTGCAAAATACATCTAAAGTTAATCCACTCCTTCAATATGAACACTTACCCTTGCGACTTGTGTTCTGTATCATTTGGATCGAAAGAGTCATTGAAAATACATTTGGAGAGCAAACATTTGGCCGAAGACGAAATCTACAAATGCGAAGAGTGCAATCTGGTATTCAAAGGGTCTCTGAAGTTCGACGAACACAACGAAACTAATCACGTTACTATCGATTCTATCGCACATTCAAAGAGCTTACCGCGTTGCATTATTTGCACGAAAGATTTCAGCACACGGAAAACTTTGAAACGTCACATTAAGAAGTTCCACGAAGAGTTCCAACCGGAGGAACTTGCGGACTACGGATGCAAAAAGCGCTCTTTTAATGTAAATTGCGAAGACTGCCTCAAAAATATCAGCGATGATTTCTATTTGAACATTTACAACAAATTGAGGAATGTTAAGGATTCCATCGTTTTCAAATGCGAAACGTGTCATTCTCGATTTAGTTGTATAGAATTTGCAATACAAAGACACAGGGTTGTCAATACTGATGTGAAGCCTAAGCTCATTTTGAGCGATCTATGCACTACGCAAATGAGTGACGAGGATGCTGGTTATTCCGGATTTGGTTCCCTACATGAATATATGGAAGCGGAAAGCACAACTGCTGATATCAAGCTGGAGCCCAGCGATGATATAGCAATGGAAGATGTCAAGAGAGAGCCAATGTCACCTTGA
- Protein Sequence
- MSQGDFVCDYCSRSFTRKHNLQTHIDNCHVNSACYCEICDQKFGSPAGLQLHLSRGHNRYGQSYPECDVCGRIFTRKQNIMSHMITVHLQGIGPEIRCRICWKTFTTERNLKRHIKLLHNPDLEYPTCDECHKAFKSKHSLVAHIQAAHNASDRTIKCHMCDKIYTNNRNLKRHIEMLHGEKEDHRCHICPKVYTSNQSLKRHIRTAHNSDEDSLQCEIKLIESEIAVISHDDSTDSDDAILCNVCNRDFSEETQLRQHVKLEHTFEAFYDYCRNFLQKQANKDQPADKQMIYKCEFCLTAYFNVYELKDHMKVNHDTEYNLSTCNVCFSKFYSKESLFEHKKFCLPPPDVNVCSHCDKLFSEIASLEFHTKIFHPQAQLADSRITSTKCDISDLTSFKCEHCSRIYYSDRSLKHHIKLKHSTDEVVECGYCNKICNNKYYLASHIKIVHSIVDLSKCDYCDKLFKSKRNIRRHIEYTHMGMQRYKCVECETLFKEKRSLRKHVRTKHPNSASFPQCHICRKRFESAKSCKIHLKLIHSFNMNTYPCDLCSVSFGSKESLKIHLESKHLAEDEIYKCEECNLVFKGSLKFDEHNETNHVTIDSIAHSKSLPRCIICTKDFSTRKTLKRHIKKFHEEFQPEELADYGCKKRSFNVNCEDCLKNISDDFYLNIYNKLRNVKDSIVFKCETCHSRFSCIEFAIQRHRVVNTDVKPKLILSDLCTTQMSDEDAGYSGFGSLHEYMEAESTTADIKLEPSDDIAMEDVKREPMSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01209552;
- 90% Identity
- -
- 80% Identity
- -