Basic Information

Insect: Apeira syringaria
Gene Symbol: -
Assembly: GCA_934045895.1
Location: CAKOGY010000253.1:467067-491007[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 2.1e-05 0.0018 19.1 1.4 1 23 234 256 234 256 0.96

2 20 0.0047 0.39 11.7 1.1 1 20 262 281 262 284 0.94

3 20 1.5e-05 0.0012 19.6 5.6 1 23 303 325 303 325 0.98

4 20 6.9e-05 0.0058 17.5 4.1 1 23 331 353 331 353 0.99

5 20 2.6e-05 0.0022 18.8 5.3 1 23 359 381 359 381 0.97

6 20 8.1e-06 0.00067 20.4 6.4 1 23 387 409 387 409 0.98

7 20 8.8e-07 7.3e-05 23.4 2.9 1 23 415 437 415 437 0.98

8 20 7.2e-05 0.006 17.4 6.7 1 23 443 465 443 465 0.97

9 20 7.2e-05 0.006 17.4 6.0 1 23 471 493 471 493 0.97

10 20 3.5e-07 2.9e-05 24.7 1.9 1 23 499 521 499 521 0.98

11 20 3.5e-05 0.0029 18.4 7.9 1 23 527 549 527 549 0.98

12 20 5.4e-07 4.5e-05 24.1 6.7 1 23 555 577 555 577 0.98

13 20 3.2e-06 0.00026 21.7 5.2 1 23 583 605 583 605 0.98

14 20 5.9e-06 0.00049 20.8 5.0 1 23 611 633 611 633 0.96

15 20 7.8e-06 0.00065 20.4 5.2 1 23 639 661 639 661 0.98

16 20 2.2e-06 0.00018 22.2 6.0 1 23 667 689 667 689 0.98

17 20 1.3e-05 0.001 19.8 8.1 1 23 695 717 695 717 0.97

18 20 1.9e-06 0.00016 22.3 5.1 1 23 723 745 723 745 0.97

19 20 0.00024 0.02 15.8 0.3 1 23 752 774 752 774 0.97

20 20 0.019 1.6 9.8 5.4 1 23 784 806 784 806 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	2.1e-05	0.0018	19.1	1.4	1	23	234	256	234	256	0.96
2	20	0.0047	0.39	11.7	1.1	1	20	262	281	262	284	0.94
3	20	1.5e-05	0.0012	19.6	5.6	1	23	303	325	303	325	0.98
4	20	6.9e-05	0.0058	17.5	4.1	1	23	331	353	331	353	0.99
5	20	2.6e-05	0.0022	18.8	5.3	1	23	359	381	359	381	0.97
6	20	8.1e-06	0.00067	20.4	6.4	1	23	387	409	387	409	0.98
7	20	8.8e-07	7.3e-05	23.4	2.9	1	23	415	437	415	437	0.98
8	20	7.2e-05	0.006	17.4	6.7	1	23	443	465	443	465	0.97
9	20	7.2e-05	0.006	17.4	6.0	1	23	471	493	471	493	0.97
10	20	3.5e-07	2.9e-05	24.7	1.9	1	23	499	521	499	521	0.98
11	20	3.5e-05	0.0029	18.4	7.9	1	23	527	549	527	549	0.98
12	20	5.4e-07	4.5e-05	24.1	6.7	1	23	555	577	555	577	0.98
13	20	3.2e-06	0.00026	21.7	5.2	1	23	583	605	583	605	0.98
14	20	5.9e-06	0.00049	20.8	5.0	1	23	611	633	611	633	0.96
15	20	7.8e-06	0.00065	20.4	5.2	1	23	639	661	639	661	0.98
16	20	2.2e-06	0.00018	22.2	6.0	1	23	667	689	667	689	0.98
17	20	1.3e-05	0.001	19.8	8.1	1	23	695	717	695	717	0.97
18	20	1.9e-06	0.00016	22.3	5.1	1	23	723	745	723	745	0.97
19	20	0.00024	0.02	15.8	0.3	1	23	752	774	752	774	0.97
20	20	0.019	1.6	9.8	5.4	1	23	784	806	784	806	0.99

Sequence Information

Coding Sequence: ATGTTTAGAACACGTTTCCACGAGCATACTTGGGACGGCTTACAGGTCGACGACCCGTCGGCCGTCCCAGGTATCGCTGGAGCGATGAAGATTCAACTGACTGTCAGTGAAGACGGCATAGTTACAGTCGTCGAGCCCGGAAGCAGTAAGATGATAGAAAAGGACGAGCTACACGAGACTATCAAACTGCCTTCAGACCATACTTTGACAGTACACCAGTTGCAACAAATTGTGGGACAACAGCTCGGCACACAAGTGTTAGAAAACGTGGTTCGCATTGAACAAGCGACAGGCGAACCCGCCAACATCCTCGTCACCCACAATGCAGACGGTACCACGTCGATAGAAGCGAGCGCATCTGATCCACTGGCCATAGTGAAAGACGAGAAGACACAATCAAAAATGGAAACTGCCCAGTTTGCCATACCAGCTGAAATTAAAGATATCAAGGGGATTGATTTAAAGAGTGTGGGCGCAATGGGCATGGAAGGCGCAGTCGTTAAGATTTCGTCTGCATCCGACAATGACATGACTGCGATGTACAAAGTCAATGTTGAAGATCTATCACAGTTGCTGGCTTATCATGAAGTATTCGGAAAACTTAATACCGATGGCCAGACGCAAAAAGGGAATGATATAGAAATTGATGTTCCGGGGACCAGCCAGGGTATGTCCGAAGCAGAATCTTCGCCAGGGCATCATGCTTGTGATATATGCGGAAAAGTTTTTCAGTTCCGATATCAACTTATAGTTCACAGACGCTACCACGGCGAGAGCAAACCTTATACATGCCAAGTTTGCGGTTCTTCTTTCGCCAATCCTCTTGAGCTGTCACGCCATGGAAAATGCCATCTTGCTGGAGATCCAGCTGAAAGGCACGCCAAAAGAATGACTCAAGACAAACCTTACGCTTGCACAACTTGCCATAAAACTTTCTCACGTAAAGAACATTTGGACAACCACGTGAGAAGTCACACTGGAGAAACTCCTTACAGATGCGAGTTTTGCGCCAAAACGTTCACTCGCAAGGAGCATATGGTGAACCACGTGCGAAAACACACGGGCGAGACTCCGCACCGATGCGACATATGCAAGAAAAGCTTTACGAGGAAAGAACATTTTATGAACCACGTCATGTGGCATACGGGTGAGACGCCACATCAGTGCCAAACTTGTGGCAAGAAATATACTCGAAAGGAACACTTGACGAACCATGTCCGGTCCCATACGAACGATACTCCGTTCAGGTGTGAAATGTGTGGGAAGTCTTTTACTAGAAAGGAACACTACAGCAATCACATTATGTGGCATACCGGTGAAACCCCCCATCGTTGCGACTTCTGTTCCAAAACATTCACCCGCAAAGAGCATCTACTAAATCACGTGCGTCAACACACGGGCGAGTCTCCTCACCGCTGCGACTTTTGTTCCAAATCTTTTACAAGACGCGAGCACCTCGTCAACCATGTTCGGCAACACACGGGGGAAACGCCTTTCCAGTGTGGATACTGCCCAAAAGCTTTCACGCGGAAGGACCATCTCGTGAACCACGTCCGTCAGCACACGGGAGAGTCACCACACAAATGTTCGTTCTGTACCAAGTCGTTCACGCGCAAGGAACATCTCACTAACCACGTGAGACAGCACACCGGCGAGTCGCCGCATCGCTGCACCTACTGCGGCAAGTCGTTCACGAGGAAAGAACATCTCACTAACCATGTCAGACAACACACGGGCGAGACCCCCCACAAGTGCACGTACTGCCCGCGCGCGTTCTCGCGCAAGGAGCACCTCAACAACCACGTGCGCCAACACACTGGCTTCACGCCGCACGCCTGCTCCTACTGCAACAAGAGCTTCACCAGGAAGGAGCATCTCGTCAACCACGTGCGGCAACACACGGGCGAAACTCCATTCAAGTGCACGTTCTGTTCGAAGTCGTTTTCTCGCAAGGAGCATCTAACGAACCACGTGAACCTACACACGGGAGAGACGCCGCACAAGTGTCCGTTCTGCACTAAAACATTCTCGAGGAAAGAACACCTCACCAATCACGTCAGAATACACACAGGAGAATCTCCACATCGCTGTGACTTCTGCCAGAAAACTTTCACCCGCAAAGAACACCTCACAAACCATATGAAACAACATACAGGAGACGCGGCGCATTCTTGCAAGGTTTGCTCGAAGCCGTTTACGAGAAAAGAACATCTGATTACTCATATGAGATCACACAGTTGCGGCGAACGGCCGTACAGTTGTGGCGAGTGTGGCAAATCCTTCCCACTCAAAGGCAACCTGATGTTCCACGAACGGTCTCACCAGAAATCAGGGGGCGGCGCAAGACCCTTCCGCTGCGACGTTTGCTCCAAGGACTTTATGTGCAAAGGGCACCTGATCTCGCACCGGCGCACGCACGCGGAGGCGGGCGGAGCTGCGGGCGCGGGCGGGGGCGAGGCACCGCCCGCGGAGCCGCGGCCACAGCCCGAAGAGGAATGCACGCCCAAATGCATCAAAATTGAAGTTGATCCACTGTCACACGACATAAAGCCTAAAGTGGAAGAAGCACGGGCGACGGAAAACGTAATACTTCCACAAAACTCTCCAAACACTTCTACAGTGGTTCAGATAACAAACCAACAAGTCGTGAGAGCCGCTACATCGAGCGCTACGGGGATGTCGTCCTCAACATTCACGCACACGGTCGCCGCACAGCACCACGCCGGGCCCGCCATTGCGCACCACCCGGTTAGCGTCACTTACTAG
Protein Sequence: MFRTRFHEHTWDGLQVDDPSAVPGIAGAMKIQLTVSEDGIVTVVEPGSSKMIEKDELHETIKLPSDHTLTVHQLQQIVGQQLGTQVLENVVRIEQATGEPANILVTHNADGTTSIEASASDPLAIVKDEKTQSKMETAQFAIPAEIKDIKGIDLKSVGAMGMEGAVVKISSASDNDMTAMYKVNVEDLSQLLAYHEVFGKLNTDGQTQKGNDIEIDVPGTSQGMSEAESSPGHHACDICGKVFQFRYQLIVHRRYHGESKPYTCQVCGSSFANPLELSRHGKCHLAGDPAERHAKRMTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHQCQTCGKKYTRKEHLTNHVRSHTNDTPFRCEMCGKSFTRKEHYSNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCDFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCGKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNNHVRQHTGFTPHACSYCNKSFTRKEHLVNHVRQHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHMKQHTGDAAHSCKVCSKPFTRKEHLITHMRSHSCGERPYSCGECGKSFPLKGNLMFHERSHQKSGGGARPFRCDVCSKDFMCKGHLISHRRTHAEAGGAAGAGGGEAPPAEPRPQPEEECTPKCIKIEVDPLSHDIKPKVEEARATENVILPQNSPNTSTVVQITNQQVVRAATSSATGMSSSTFTHTVAAQHHAGPAIAHHPVSVTY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030446;
90% Identity: -
80% Identity: -