Asyr000378.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000006.1:353725-362107[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-11 5.2e-08 32.9 0.0 4 39 175 211 172 215 0.90 2 4 1.5e-11 3.4e-08 33.5 0.3 2 39 227 264 226 267 0.92 3 4 2.3e-16 5.1e-13 48.9 0.2 2 45 282 326 281 326 0.96 4 4 3.5e-18 7.7e-15 54.8 0.0 1 41 333 374 333 375 0.95
Sequence Information
- Coding Sequence
- ATGCCCGGAAACGGACCATTTCAAGTAAAATGCGAACCTCCATCCGACGAAGATGATAACAGCCCGCAATTACCTGGAATATTTTGTAATAATAAGCTTACTTCGGAGCACTTTTCAATGAAATCCGAAACGATTGGGCAGAGTGATGAGAATACGTCATCGGATTTATTACAACATTTGCGGACACCAGGAGGTTTGGAAGAGCTGGTACCGCTGGCGCCGGCGGGGCCTGCTGCGACTCCAGTGTGCGTGAAACAGGAGCCGGGGGACACGGCCCTTACACTTGAGACCCTTGAGTCCTCTCCCCATAGCGCGGGTTGTTCGCTTCTGGAGAGACACCTGGCTTTGCTGAGCTCATCAGAAGAGTTGGTCGAATCTAGTTTTACTCCACTGCACTTGGTGAAGGACGAACCTTTGTCTGAAGGAGAGTTACAGCATGCTAGTGGCGACGAGGCGAGCGAGCCGAGCCGCGACGGGGAGGCGGGGGGGCCCCGCGGGAGCCCCAAGAGCTGGACCCAGCGAGACATGGACAACGCTCTCGATGCGCTCAGGAATCATCACATGAGCCTCACCAAGGCATCAGCGACATACGGCATCCCGTCAACGACGCTCTGGCAACGAGCTCACCGCCTCGGCATCGACACTCCGAAGAAGGAAGGAGGCGCCAAGTCCTGGTCGGAGGCCGACCTGCGAGGGGCCCTGCACGCGCTGCGAGCCGGCGCCATCTCCGCCAACAAGGCCAGCAAAGCTTATGGCATCCCGAGCAGCACGCTGTACAAAATCGCGCGGCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCGCCGGTCGCGTGGCGGCGTGGGGACCTCGCGCGCGCGCTACACGCCATCCGCGCCGGCGCCGCTTCCGTGCAGCGCGCCGCCGCGCAGTACGGCATCCCCACCGGAACCCTGTACGGACGATGCAAACGTGAAGGAATAGAACTGTCCAGATCGAACCCCACGCCATGGTCCGAGGACGCTATGGGGGAAGCTTTAGAAGCAGTCAGGGTGGGTCAAATGTCAATCAACCAAGCAGCCATTCACTACAATTTGCCTTACTCGTCCCTTTACGGCAGGTTCAAGAGATGTAAATATCTTAATCGGGGAAGTTTCACAACCGAAGAAATGACCACTCAGCACATGCCACAACTGGGAAGCCCTAAAACCTCCGAAGTGGAGGCTAGCCCGCAAGATCTGTCCTATTACCAACAGATGTCGTCCATGTACCCAGAACAAGATCACACGATCACCCAAAACCAGTACACGCCTCATGAATATCCTCAGAATGCCTCGACACATGAGAATATAGCGATACAGGACCCGTACACCACTGGCACCGGCTCAACTATGTATTACAACCAGAGCTTCAACAGTATAGTAACAAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPPSDEDDNSPQLPGIFCNNKLTSEHFSMKSETIGQSDENTSSDLLQHLRTPGGLEELVPLAPAGPAATPVCVKQEPGDTALTLETLESSPHSAGCSLLERHLALLSSSEELVESSFTPLHLVKDEPLSEGELQHASGDEASEPSRDGEAGGPRGSPKSWTQRDMDNALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGGAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALHAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYLNRGSFTTEEMTTQHMPQLGSPKTSEVEASPQDLSYYQQMSSMYPEQDHTITQNQYTPHEYPQNASTHENIAIQDPYTTGTGSTMYYNQSFNSIVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -