Asor028821.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000121.1:458621-484128[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0038 0.32 12.4 2.9 1 23 307 329 307 329 0.98 2 10 0.9 75 4.9 2.1 1 23 336 358 336 358 0.86 3 10 0.00012 0.0097 17.1 0.4 2 23 365 386 364 386 0.96 4 10 4e-05 0.0033 18.6 3.5 1 23 392 414 392 414 0.98 5 10 0.00026 0.022 16.0 2.1 1 23 420 442 420 442 0.96 6 10 3.8e-05 0.0032 18.6 0.5 1 23 448 470 448 470 0.95 7 10 1.3 1.1e+02 4.4 1.4 1 13 485 497 485 499 0.91 8 10 1.3 1.1e+02 4.4 1.4 1 13 541 553 541 555 0.91 9 10 1.3 1.1e+02 4.4 1.4 1 13 597 609 597 611 0.91 10 10 8.4e-06 0.0007 20.7 0.9 1 23 653 676 653 676 0.97
Sequence Information
- Coding Sequence
- ATGGCCGAAACGAGTACAATGAACTCCGATAATAAAATGGAGCAGATCGAGAAGAAGGAAGACATGGAGGGTATCAAGACTGAGGTGGAGGTGCTGGTGAAGCACGAGCAGCTGGAGTGCGTAGCGTGCACGACGCGCAGCTTAGAGTGCGTGGACATCTACTGCACCACGACGCGTGTGTCCGGCGCCAAGCTCAGCACCTTCTTGCACAAGTTCACGCAGATGGATCTGGCTGGCCACACCGCCTGCAAGTTCATGTGCAAGAGCTGCTACGACCTCATCAACGTGCTAGAGCAGGCCGAGATAGAGTACGTCAAGTTGAAGGAGACTTTCGAAGCCATCCTTAGCAAGAACCCTCTATTTGATTCTCAAACAGTCCAGCCCATCCGGTTGTCAGACGTGAAGGCAGAGtttgatgctgatgatgatgatgacgactaTGTGTGTGAcaatgtggatgatgatgactcgGATGACGAACCACTGGCCACTCAGAGCAAACGAAAGAGATACAAGGttgagaagaaaaagaaaaaaatatccacAAGCAAACGTAAAGTGAAAAGTAAAACCAACAGTGACAGTTGGAAATGTGAGGAGTGTGGAGCAAAGGGTACGACAGGGGGGGCCATTGGCCTGACGGCTCACAAGCTGGCTGTGCACACAATGGACGATCCTTCTGACTTGCTGCCAGAGGTCAAGATTGAGAACTCTGCTGAAGGATCACAAAGTCCCCTATACAACAATGGCTTTGGTAACTGTCTAAAAGTCGAATTAGAAAACTATGATGAAGACGATGACAGTTTGGGTGTTGACGACCTTAGCAATGACATGCAACCTGTCAAGAAAAAAATAGGCAGACCATTAAAGACTAAGATAATACCGGCACAGCCCAGGAACAAGAAGGCCAAAGTAGTGCACCAGTGTGACCAGTGTGATGCTAAATATACTTCTTTATCTCGCTTGGAGCAGCACAAACAGAAGCACGACGGCTCCAAACCGCCCTACATCTGCGAAGTGTGCGGCGCGCACTACAAGCACAAGCGAGCCTGCGACATACACATCGCGCTACACAAAGGTATAAGTGACTGGAAATGTGAAGAGTGCAATAAGTTATTCCCATCTAAGAATGCTTTACAGAGGCACAACAACATACATACGGGCAAGCTGAACTACCAGTGCGACTTGTGCGGCAAGTCGTTCATCCACACGTCGTCGTTCAAGATGCACAAGCTGTCGCACTCGGGCGTGAAGCCGCACGCGTGCGACGTGTGCGGGCTGGCGCTCATGACGCGCTCGCACCTCAAGCGGCACAAGCGCGTGCACTCGGGCGAGAAGCGCCACGAGTGCGCCGTGTGCGGGAAGAGGTTCTCCGAGAGGTACAACCTGGCGGCGCACAGCAAGGCGCACGagggcgccgccgcgccgcgcgagccgccgcgccggcgccTGTTCCGCTGCACCTTCTGCCCCGAGCGCTTCGAGCGCCGgcgccggcgccgcgcgagccgccgcgccggcgccTGTTCCGCTGCACCTTCTGCCCCGAGCGCTTCGAGCGCCGGTGAGTACACGCACGCAcaggcgccggcgccgcgcgagccgccgcgccggcgccTGTTCCGCTGCACCTTCTGCCCCGAGCGCTTCGAGCGCCGgcgccggcgccgcgcgagccgccgcgccggcgccTGTTCCGCTGCACCTTCTGCCCCGAGCGCTTCGAGCGCCGGTGAGTACACGCACGCAcaggcgccggcgccgcgcgagccgccgcgccggcgccTGTTCCGCTGCACCTTCTGCCCCGAGCGCTTCGAGCGCCGgcgccggcgccgcgcgagccgccgcgccggcgccTGTTCCGCTGCACCTTCTGCCCCGAGCGCTTCGAGCGCCGGTGAGTACACGCACGCAcaggcgccggcgccgcgcgagccgccgcgccggcgccTGTTCCGCTGCACCTTCTGCCCCGAGCGCTTCGAGCGCCGGTACATGCTGGAGCGTCATATGTCGGTGGTGCACGGGCGCACGCTGGAGCGTCCGCCGCCCACGCCGCGCAACACCATGAGCAAGCTGCTCaaggcgcaggcgcagcgccGCGACCTGCCCGCCGGTGCCGGTACGTACACTCACACGCTGGAGCGGTTCCCACGCCGCGCAACACCATGA
- Protein Sequence
- MAETSTMNSDNKMEQIEKKEDMEGIKTEVEVLVKHEQLECVACTTRSLECVDIYCTTTRVSGAKLSTFLHKFTQMDLAGHTACKFMCKSCYDLINVLEQAEIEYVKLKETFEAILSKNPLFDSQTVQPIRLSDVKAEFDADDDDDDYVCDNVDDDDSDDEPLATQSKRKRYKVEKKKKKISTSKRKVKSKTNSDSWKCEECGAKGTTGGAIGLTAHKLAVHTMDDPSDLLPEVKIENSAEGSQSPLYNNGFGNCLKVELENYDEDDDSLGVDDLSNDMQPVKKKIGRPLKTKIIPAQPRNKKAKVVHQCDQCDAKYTSLSRLEQHKQKHDGSKPPYICEVCGAHYKHKRACDIHIALHKGISDWKCEECNKLFPSKNALQRHNNIHTGKLNYQCDLCGKSFIHTSSFKMHKLSHSGVKPHACDVCGLALMTRSHLKRHKRVHSGEKRHECAVCGKRFSERYNLAAHSKAHEGAAAPREPPRRRLFRCTFCPERFERRRRRRASRRAGACSAAPSAPSASSAGEYTHAQAPAPREPPRRRLFRCTFCPERFERRRRRRASRRAGACSAAPSAPSASSAGEYTHAQAPAPREPPRRRLFRCTFCPERFERRRRRRASRRAGACSAAPSAPSASSAGEYTHAQAPAPREPPRRRLFRCTFCPERFERRYMLERHMSVVHGRTLERPPPTPRNTMSKLLKAQAQRRDLPAGAGTYTHTLERFPRRATP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -