Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000031.1:1520679-1535884[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.1 8.6 7.8 0.8 1 23 370 392 370 392 0.98

2 11 0.0036 0.3 12.4 8.8 1 23 399 421 399 422 0.94

3 11 0.39 32 6.0 3.2 1 23 426 448 426 448 0.97

4 11 0.11 8.9 7.8 2.0 1 23 453 476 453 476 0.97

5 11 0.0039 0.32 12.3 0.2 1 23 480 503 480 503 0.94

6 11 5.7 4.8e+02 2.4 0.2 3 20 517 534 516 536 0.89

7 11 1.4 1.2e+02 4.3 0.3 2 23 596 618 595 618 0.94

8 11 0.012 0.99 10.8 0.6 2 20 634 652 633 655 0.91

9 11 2.8e-05 0.0023 19.1 1.4 1 23 661 683 661 683 0.99

10 11 4.9e-05 0.0041 18.3 4.5 1 23 690 712 690 712 0.97

11 11 4e-05 0.0034 18.6 1.3 1 23 718 741 718 741 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.1	8.6	7.8	0.8	1	23	370	392	370	392	0.98
2	11	0.0036	0.3	12.4	8.8	1	23	399	421	399	422	0.94
3	11	0.39	32	6.0	3.2	1	23	426	448	426	448	0.97
4	11	0.11	8.9	7.8	2.0	1	23	453	476	453	476	0.97
5	11	0.0039	0.32	12.3	0.2	1	23	480	503	480	503	0.94
6	11	5.7	4.8e+02	2.4	0.2	3	20	517	534	516	536	0.89
7	11	1.4	1.2e+02	4.3	0.3	2	23	596	618	595	618	0.94
8	11	0.012	0.99	10.8	0.6	2	20	634	652	633	655	0.91
9	11	2.8e-05	0.0023	19.1	1.4	1	23	661	683	661	683	0.99
10	11	4.9e-05	0.0041	18.3	4.5	1	23	690	712	690	712	0.97
11	11	4e-05	0.0034	18.6	1.3	1	23	718	741	718	741	0.95

Sequence Information

Coding Sequence: ATGAGGTGTTGTGTACCGAGCTGCAAGAATGATTCACGACACATATCCAAATCACAGGGAATCACGTTCCATGTCTTCCCCAATGAGTCATCACTCCGTAAATCCTGGGTCCAGGCTCTCGGTAAAGAATCTTGGGAACCAAGGGAAAGGAGTGCGGTGTGCTCCGAACATTTTTTGTGTGAAGACTTGTACGAGACTAAGAATGGGCTACGGAAGGTTAGGGCTGGAGCTGTGCCTTTGATTGTTCAGGATTCCACGAACTGTGATTATGGAGAACCTGCCAGTTTGaagGCTTGCAGAATTTGTCTCGTAATGGATGTGAAACTAATACATATAAGAATTTACAAACTGGAGCAAGCTTATGAGAATCTCACAGGAATATCaCTATGTGAAGAGGACAAGTTGCCGCAGAAGCTCTGTGTGGAGTGTGTACACAGACTGATGAACTGCAGTCGATTTAGGCTCAAGAGTTTAAGAGCGAACTCTCTGATGCTGGAGGTTATTAAGAAACAGGATTGTttaaccgtacaaaacataaaaacaataaaccGGCTGAATAACCAACTAACATCGCCATTATCACCGAAACATTTCGAAGTCAACCACTACGACTCCTGCATAGAATACGAGGACCAGCCACTAATAATTCAGGACGAAGAATCATCGTCCACTTGCAATGTAGACATCAAAATAGAAAACGAAATATTCCTAACAGAAGATATCACGGACAAAAACGACGGACTTAACGACGACGGAATTGACGATGACGGAATTACGGATGTCTTCAACGATAAAGATGACATTTCCGAAAAAGAATACGTGTTATCTGATAAAGATAATTATTCTTCCGATGACAGTCTACCTTTAGAAAAATGCAAGGCTAAGAAAACTAGGAAAAGAAAGGAGAAAGAAATTAAACCGGTTAAAGCCGTTAAGAGggtaaaaaagataaaagatcCGACGGAGCCGAAGATTGATCGGCGAAGGAAACCGTTTTTGAGTGACGACTTGAATGAAACTCTTTTCACGATCACTGATTTGACATTTGAGGAGCAAATTGCTGAGATAGTCAAGAGGCAGGACAGTTCAAATTATAAGAATTCTGTGTTTAAGTGTACTGCGTGTTTTAAAGGGTTTTTGGATGAAGACGCTTATAATAGTCATATGACGCGGCATACTGATCAATGCGGTGAACACGAATGCGAGATTTGCAAGACGCACTTCAAACACCCGCACGCGCTCCGGAAGCATATCACAGCGCACCACACTCAACGGTTCAGCTGTAAACAGTGTACCTACGTCACAACCCATAGACAAACGGCCAGACTACACGAGCGGTGGCATAAAGGGACCAAGTATAGATGTCCGCATTGCCAAGATGAGTTTGTtaaattcACCACCTATATGGGTCATATTCGCATCAAGCATCCTTCAGACTTCGTGTGCGAGCTGTGTGGGTATTCCTTCGTCAGCGCTAAAGGCATAGAGTTGCACAAGAAGCTAAAACATCGACTGGAGAATGTACAGATACCGGAAGATGGTCCGCTATGCGAGCTGTGTAACGTTCGGTTCGTGTCTACAGAAGCTCACAAACGGCATCTTAGCGTTTCAGCTAGACATAATACagGTACAGACAAAGATTCGAGAGAATCAAATAAACCCAAAAAGGGCAGGAAATCTAAAGAATGCAAGGAGCTCGAACGAAGGGCGCGAGAGAAGGACAAAGACTCAGATGAAAAGAGACGGATATATCCCAGTCAGATGCGCAAGGCAGAAGGACCTATACCATGTGAACAGTGTGGCATTCAACTAGAAGATTCACGGGCGTACCACGGCCACTTTAGACGAATGCATCCGGACAAGAATCGAACCAACTACCCTTCAATGAAGTCACCATGCATGTGCGAAGTTTGTGGGAGAATGTTCCAAAGTTACGCCCTCCTAAAAGACCACACCTGGGTCCACACCGGCGAACGGCCATTCAAATGCGACTCTTGCGGCAAGTCCTTCAGAATGAAGcaacgcctcgtcgcacaccgGAGGGTCCACAGTCAAGTGCGCGCGAGTTACGTGTGCGCGCTCTGCGGGAAGCACTTCTCGACGCATAGCAACCGACAGAGGCACATGTTTaTCCACACCGGTCTAAAGCCGTTCAAATGTGAGATGTGCGGCAAAGGCTTCAAGCACGCAAGTGAGAAACGTGCTCACATCACATACGTACATCTTAAGAAGCCGTGGCCGAAGCGAGCAAGAGGGAAGCGAAGACCTGACACTAGACAGGGCCAGATACCCCAAGATCAGGACATGGACATGCAGGCCCCCATGTGGCCCCCTTGTGACCCCAAGATGGGGGAAATGGGCCCCATGATCGAGGACAAACCTGTTTACTATAACTTGAAGATTAACTAA
Protein Sequence: MRCCVPSCKNDSRHISKSQGITFHVFPNESSLRKSWVQALGKESWEPRERSAVCSEHFLCEDLYETKNGLRKVRAGAVPLIVQDSTNCDYGEPASLKACRICLVMDVKLIHIRIYKLEQAYENLTGISLCEEDKLPQKLCVECVHRLMNCSRFRLKSLRANSLMLEVIKKQDCLTVQNIKTINRLNNQLTSPLSPKHFEVNHYDSCIEYEDQPLIIQDEESSSTCNVDIKIENEIFLTEDITDKNDGLNDDGIDDDGITDVFNDKDDISEKEYVLSDKDNYSSDDSLPLEKCKAKKTRKRKEKEIKPVKAVKRVKKIKDPTEPKIDRRRKPFLSDDLNETLFTITDLTFEEQIAEIVKRQDSSNYKNSVFKCTACFKGFLDEDAYNSHMTRHTDQCGEHECEICKTHFKHPHALRKHITAHHTQRFSCKQCTYVTTHRQTARLHERWHKGTKYRCPHCQDEFVKFTTYMGHIRIKHPSDFVCELCGYSFVSAKGIELHKKLKHRLENVQIPEDGPLCELCNVRFVSTEAHKRHLSVSARHNTGTDKDSRESNKPKKGRKSKECKELERRAREKDKDSDEKRRIYPSQMRKAEGPIPCEQCGIQLEDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHTWVHTGERPFKCDSCGKSFRMKQRLVAHRRVHSQVRASYVCALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHITYVHLKKPWPKRARGKRRPDTRQGQIPQDQDMDMQAPMWPPCDPKMGEMGPMIEDKPVYYNLKIN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038854;
90% Identity: iTF_00746209;
80% Identity: iTF_00124344;