Basic Information

Insect: Apamea sordens
Gene Symbol: Bcl11b
Assembly: GCA_945859755.1
Location: CAMAOQ010000031.1:692694-702711[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.29 24 6.4 0.6 1 23 288 311 288 311 0.92

2 10 0.0012 0.1 13.9 0.9 2 23 346 368 345 368 0.96

3 10 0.0012 0.1 13.9 0.8 1 23 372 395 372 395 0.96

4 10 0.0024 0.2 13.0 4.4 2 23 399 421 398 421 0.97

5 10 0.046 3.8 8.9 1.9 3 23 426 447 425 447 0.97

6 10 0.14 11 7.5 0.5 3 21 466 484 465 489 0.92

7 10 0.0022 0.18 13.1 0.2 2 23 498 520 497 520 0.95

8 10 0.022 1.8 10.0 2.6 1 23 526 549 526 549 0.95

9 10 0.00037 0.031 15.5 0.7 3 23 560 580 559 580 0.98

10 10 3.4e-05 0.0028 18.8 0.4 1 23 586 609 586 609 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.29	24	6.4	0.6	1	23	288	311	288	311	0.92
2	10	0.0012	0.1	13.9	0.9	2	23	346	368	345	368	0.96
3	10	0.0012	0.1	13.9	0.8	1	23	372	395	372	395	0.96
4	10	0.0024	0.2	13.0	4.4	2	23	399	421	398	421	0.97
5	10	0.046	3.8	8.9	1.9	3	23	426	447	425	447	0.97
6	10	0.14	11	7.5	0.5	3	21	466	484	465	489	0.92
7	10	0.0022	0.18	13.1	0.2	2	23	498	520	497	520	0.95
8	10	0.022	1.8	10.0	2.6	1	23	526	549	526	549	0.95
9	10	0.00037	0.031	15.5	0.7	3	23	560	580	559	580	0.98
10	10	3.4e-05	0.0028	18.8	0.4	1	23	586	609	586	609	0.98

Sequence Information

Coding Sequence: ATGGATATAAAAGATGAATCTAAACGCATATTTACGCTATGCGAAGGCTGTTTAAGCACTGATAGAAAGCTTAAATGCATAACTGGTCAGACTCAAGCGCTATTTATAAAACTAAGAGAAGATGTGATCCAAAATGAAAATgaGACAAGAGGGCTAATGCTGTGTTGGGAATGTAATGCTTTACTGAACAAGATGAAGTACTTCCAAGCTCGCATCAAAACCGCTCAATACAGACTGGTGCAGTATCTACAAACCTTCTATGACAacaagAGCGGCATCCCACACACATTATcactattaataaaaacagaacACAAAGAATTTGACTACAACTATATCAATGAAGACGATCAAAAAGATCTACTATTTGAACAAAACAACTTTTTTCATGAACAAAAATGCCAAAGTTTTGATCAAAAAAGCCAAATGTTTGAACAAAAAAGCCAAATGTTTGAACAAAAAGGCCaaatatttgaacaaaaagGCCAAATATTTGATATAAAAGAAGTACCAGTTGACGAAAGAGTTCTCATTGACGTCAAATTAGAAAACAATGAAATTATCAAAGAAGAATATGATGACGACAATATAAGTTTAAACAATGATACAGATTACTATGAACCAGAATTGAAACAGGAAACAGATGAAGATTTTACATTACTCTACTCAAACCCAAGGAAAGGATTTCGCAAATTAAAATCAAGAATTAAAAAGTATGAAGAATTTGCCTCCGTAACTAAAATTAATAGTAGATTCCCGAAAAATGTAAGTCCGTACTATGAGACAGTGTTTGTGAGTTCCAGAGATGTGGAACAAAATtatagagagaaaaataatcatAGGTTTGATAAGAATATGCCGTTCAGGTGCGATTTGTGTAATATTGGGTATAATGTGCGACTGGACTATATGCGGCACAAGACTTTGAATCATAGCGAGCTACAATTCCCTTCTAACTGCGTAGCCTGCAGACTTGAGATACTCTCCGAATCTCATCTTGAAGAACACTGGAAGAACTATCATAATCCGATGCTAAGTTGTACTTTTTGCGGAGAACTCTCGAGAACCAAGGGAGAGCTGAAGAAACATCTGAACCGGTCGCATACTAAACTGTTTACTTGTAATAACTGTTCTTTGGAATTTAGAACTCTTGGAGAATTTAGCAAACATTACATAAGTGCACATGAGAGGGTCACCTGTGATTATTGCAATAAAAACTTATGCTCAAAACGGAAACTGGAGACTCATATTAAGAAAAAACACCTCCCCGGACACTGTACCATTTGTAACAAAGACTACCCAACTTACCACATTCTAGAGATACACCTCAGAAGGGTGCACCCCGAGCTAATGCCACATTTGATACGAAACGAGACCAGCCAAGAAATGCGCTACTGCGTGGAGTGCGATAAACAGTATCCCACCATCATGAAGTACAAGAAGCATTTGCAGCAGTCCGTTAGACATAGGCCTCAGAAGAAAGTCAGgATACCCTGCCCGGCTTGCGACAAAATATTTACCCGCGTTTCTTACAAGAATAATCACTACAGATTGGTTCATATAAAGGAAAGCAAGCACTACTGCGAGCTATGTAATAAGTATTTTGCGAATGGCTACGGCGTTCGCAAGCACATTCAGCACGTGCACCAAAAGATACCGAAGCCCAAAGACAAGATCTGCGATCTATGCGGAAGAGGATTTAGTTCAAACAGGATCCTTAACAACCACCGCCGCACCCACACCGGGGAGCGCCCGTTCAAATGCCCGTACTGTCCCGCCAGCTTCGCGCAGGTAACTGCCATGAAAACGCACCAGAAGACACAACACAAGAATATTTTAATGTCCAGTTAA
Protein Sequence: MDIKDESKRIFTLCEGCLSTDRKLKCITGQTQALFIKLREDVIQNENETRGLMLCWECNALLNKMKYFQARIKTAQYRLVQYLQTFYDNKSGIPHTLSLLIKTEHKEFDYNYINEDDQKDLLFEQNNFFHEQKCQSFDQKSQMFEQKSQMFEQKGQIFEQKGQIFDIKEVPVDERVLIDVKLENNEIIKEEYDDDNISLNNDTDYYEPELKQETDEDFTLLYSNPRKGFRKLKSRIKKYEEFASVTKINSRFPKNVSPYYETVFVSSRDVEQNYREKNNHRFDKNMPFRCDLCNIGYNVRLDYMRHKTLNHSELQFPSNCVACRLEILSESHLEEHWKNYHNPMLSCTFCGELSRTKGELKKHLNRSHTKLFTCNNCSLEFRTLGEFSKHYISAHERVTCDYCNKNLCSKRKLETHIKKKHLPGHCTICNKDYPTYHILEIHLRRVHPELMPHLIRNETSQEMRYCVECDKQYPTIMKYKKHLQQSVRHRPQKKVRIPCPACDKIFTRVSYKNNHYRLVHIKESKHYCELCNKYFANGYGVRKHIQHVHQKIPKPKDKICDLCGRGFSSNRILNNHRRTHTGERPFKCPYCPASFAQVTAMKTHQKTQHKNILMSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00071835;
90% Identity: iTF_00071835;
80% Identity: -