Asor012587.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000031.1:805757-818926[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.069 5.8 8.4 4.1 1 23 270 293 270 293 0.96 2 9 1.6e-05 0.0013 19.8 1.2 1 23 300 322 300 322 0.98 3 9 0.27 23 6.5 0.4 3 23 359 380 357 380 0.94 4 9 0.00013 0.011 17.0 2.0 1 23 382 405 382 405 0.97 5 9 1.7e-06 0.00014 22.9 1.5 1 23 411 433 411 433 0.98 6 9 0.74 62 5.1 0.1 2 21 443 462 443 463 0.82 7 9 7.7e-06 0.00065 20.8 6.1 1 23 471 494 471 494 0.96 8 9 3.5 2.9e+02 3.0 0.1 1 9 500 508 500 511 0.88 9 9 0.0015 0.12 13.6 2.7 1 23 525 548 525 548 0.96
Sequence Information
- Coding Sequence
- ATGGaagaacaaataaatatatgcgTTACATGTCTAAGCACGGACCGGCATCTAGTCCCTGTGCATAAAATAACAGCGTTGCTACGCGAAATACATTTCGAAGAGctacTAGAGTCCCCAGGTGGAGTATGTTGGGAATGCCGGAGTATCCTGACGAAGTTCTACAGCTTTAAGAATAGAGCTACGATAGCGCAGACAACCTTACTACATACTACAGAGcatttcaaaataaaatctctAACAACACTGTCTAAAACCAATATTTTATTAGATCACACTTACGATTGTATTTCAAAAGACAACTGTGACAAACTAAAAGTTAAccaaaattctataaaaaaagaaaatgtagacCAAAGTAATGATTTTAAAGACCAAATTGACGATAGTTTGGACGATAATTTAGTAATAGATGAAGATCAAATTGAAAACCCGGCAAAATAcgaaaatatttattcagaaggtgatacaatagaaaataaatacgacaataaattgtTCGGGAAACAAGAAAACTTTTCTCAAGATGAAAaagatatatttaaaatgacaaataaaaaaaataaagaattcgaAACTATAGAACCTAACATAAATTTACCAACAAGAACAGTCATACAAAACAAAGATGGCGTCAGAGTTACCAAAGAGATATCACCAAAAGAATTCCAACAGATAACAGAGAATATAACAGATACAGATGATAAAGAATTCCAAGAGAAGTTTGTACAAGTTGTTATGAGTGAGGAAGAGATGGCAAGAGTCAGAGAAGAGAAAAGGAATCATCCGTCTTTTAGGAAACTTCCTCATATATGTCACGGTTGTGTGCTGGGGTTCAGAAAGGAGGAGAAATATAGAAGCCATATAAAGAAGAAACATGATGAGcgaATCGGTAATTTCGTCTGCGAGGTATGCGGAGTCAGATTTCCCCACAAACTAGCGTTAAACAAACATAGGAGGAAGCACTATGTAGTCTACAGGTGCAAGCTATGTAAATACCAGGGGAGTGACTTGCGCTCAGCGATGAACCACTGTAAGCTCAAGCATTCAGCTGATAAACCTGATAGCATACATTGTGTACAGTGTTattttgtggctaaGAACTCACAAGCTTTGGAAGAACACATGGAAAAAGAACATCAGTTCAGGTGCAACGAATGTGGAGAAAAGTTCAAATTGAAGAGGAATATCAGGACGCATATAACTAGAACTCACGCGTCAGAACGTGCATTTAAATGTgacatttgcaaaaaaagtttcactacAAAGTTGCAGCTGGAGTCTCATCTGGCCAGACATAATGATAACATTGCGAAGAAGCTCGCCTACTGCCAGGATTGCGATATTCAGTTCAAGAACATGGTCATTTACAGGGCGCATTTGAAGAATACGGCTCAACATTCCGAAGGATACACATGTTCAGAATGTCATAAAATATTCACGTCAAAAAGTTACTTGAAGAAACATTACAACTACTACCATTTACACAAAACGCAATATAATTGTGAAATATGCAATAAGAATACGGCAGTACTCAATTGTCACCGAAAAATACATTCAGAGGCGCGCACGTATATGTGTGAAGATTGTGGCGACACGTTCAGGCAATCCGCTTGCTTGTACACACACAAGCGGTTGAAGCACAAAGGTGGTGGGCGAAAAAAAATGCGTGGTGGTTGA
- Protein Sequence
- MEEQINICVTCLSTDRHLVPVHKITALLREIHFEELLESPGGVCWECRSILTKFYSFKNRATIAQTTLLHTTEHFKIKSLTTLSKTNILLDHTYDCISKDNCDKLKVNQNSIKKENVDQSNDFKDQIDDSLDDNLVIDEDQIENPAKYENIYSEGDTIENKYDNKLFGKQENFSQDEKDIFKMTNKKNKEFETIEPNINLPTRTVIQNKDGVRVTKEISPKEFQQITENITDTDDKEFQEKFVQVVMSEEEMARVREEKRNHPSFRKLPHICHGCVLGFRKEEKYRSHIKKKHDERIGNFVCEVCGVRFPHKLALNKHRRKHYVVYRCKLCKYQGSDLRSAMNHCKLKHSADKPDSIHCVQCYFVAKNSQALEEHMEKEHQFRCNECGEKFKLKRNIRTHITRTHASERAFKCDICKKSFTTKLQLESHLARHNDNIAKKLAYCQDCDIQFKNMVIYRAHLKNTAQHSEGYTCSECHKIFTSKSYLKKHYNYYHLHKTQYNCEICNKNTAVLNCHRKIHSEARTYMCEDCGDTFRQSACLYTHKRLKHKGGGRKKMRGG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121914;
- 90% Identity
- -
- 80% Identity
- -