Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000036.1:6109232-6110392[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.032 2.7 9.4 2.4 1 23 159 183 159 183 0.92

2 7 4.7 3.9e+02 2.6 0.7 2 13 189 200 188 209 0.72

3 7 2.6e-06 0.00022 22.3 2.2 1 23 215 237 215 237 0.98

4 7 0.00019 0.016 16.5 1.6 1 23 243 265 243 265 0.99

5 7 4.9e-06 0.00041 21.4 1.2 1 23 271 293 271 293 0.98

6 7 7e-06 0.00058 21.0 0.9 1 23 299 322 299 322 0.97

7 7 1.8e-05 0.0015 19.6 1.5 1 23 328 351 328 351 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.032	2.7	9.4	2.4	1	23	159	183	159	183	0.92
2	7	4.7	3.9e+02	2.6	0.7	2	13	189	200	188	209	0.72
3	7	2.6e-06	0.00022	22.3	2.2	1	23	215	237	215	237	0.98
4	7	0.00019	0.016	16.5	1.6	1	23	243	265	243	265	0.99
5	7	4.9e-06	0.00041	21.4	1.2	1	23	271	293	271	293	0.98
6	7	7e-06	0.00058	21.0	0.9	1	23	299	322	299	322	0.97
7	7	1.8e-05	0.0015	19.6	1.5	1	23	328	351	328	351	0.96

Sequence Information

Coding Sequence: ATGTCGCTTTCAATTTTACTGTTAAAAATGTTGCATTGCAAACAGATGAATGGCAGAACTACGAGCGCAGGGGAGGACTTGGCCCGCGATAGTATCTCGCTCCAAAACTCAGGACGAAAAATCAGCATAAAGAAAGAACATACCCACGATAGCGTATGCAGGGTTTGCCTTAAAGAAGGTTGTATACCAATCCACGGGAACAAAACAGCAGAAGACCTTTCCGAATCGATCAACATATTTGCCGGCATAGAAGTAAAAATAGACGATCCGTATCCCAAGTACTTATGTGAGCCATGCAACACCCTTCTTCTAGGAGCCATAGAATTTAGGAAAAGTGCACAACAGTCTGATGAAATTCTAAAACATCCTCCTGAAGATTTGATAACTGATGGTATTGATGATACATTCAATTACCCTGAGGACGAAGACAACTCCTGGGAATATGAAGAACGCAAAACCAGTAAAAAGAGGACATACCATTGTAAAAAATGTGAAATATCATTTGATACATTCAAAGACTATGACGATCATAGAATGACTGAGGAACATGAGAATAGGAAAATTACATGTCCTATCTGCAACAACGCTTATGCAgacttatattttaaaaagcATTTAGCATTACACAGAGACAAGGCCTCGTATATGTGTGATATTTGTGGAAAAAACTTCATAATGCAGGGGCATTTCACCCGTCACCGTCTGACACATTTCTACAAACTACCTTTCAAATGTTCTCTTTGTCCGTACAAAGGAAGGTTCAGTGAATCCCTAAAAATGCACATGCGCTCACACACTGGAGAAAAACCATACCAATGTACACAATGCCCTTcaagatttataaataaaagtaatttaaacaaacatgcGTTAAGACATAAGGGAGAACATGATTTTAAATGTGAAACATGCGGTCGAGGGTTCTATACTAAACGGGAATTGGAACTTCACTATAAAGTAGATCATACGGGGATAAAGGACCATGTTTGTAACATTTGTGGGAAAGCTTTTGGTTATAGAAAGCAGATGATGAAACATCAGCTAAAAGTGCATAAGAGGGCTAAACTCCGAAGTGGGAGAATGCCTTTGTACTTGCAagtagaaaatatgaaacaacAGGGCCAAGATATTTCTAGTGAGAGTGAAGCCAAAAGCTTTTAA
Protein Sequence: MSLSILLLKMLHCKQMNGRTTSAGEDLARDSISLQNSGRKISIKKEHTHDSVCRVCLKEGCIPIHGNKTAEDLSESINIFAGIEVKIDDPYPKYLCEPCNTLLLGAIEFRKSAQQSDEILKHPPEDLITDGIDDTFNYPEDEDNSWEYEERKTSKKRTYHCKKCEISFDTFKDYDDHRMTEEHENRKITCPICNNAYADLYFKKHLALHRDKASYMCDICGKNFIMQGHFTRHRLTHFYKLPFKCSLCPYKGRFSESLKMHMRSHTGEKPYQCTQCPSRFINKSNLNKHALRHKGEHDFKCETCGRGFYTKRELELHYKVDHTGIKDHVCNICGKAFGYRKQMMKHQLKVHKRAKLRSGRMPLYLQVENMKQQGQDISSESEAKSF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00038157;
90% Identity: iTF_00758615;
80% Identity: -