Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000095.1:821252-827213[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0059 0.49 11.8 0.9 1 23 10 33 10 33 0.95

2 15 3.1 2.6e+02 3.2 0.6 2 23 61 83 60 83 0.91

3 15 5.5 4.6e+02 2.4 4.6 2 23 106 129 105 129 0.88

4 15 0.0014 0.12 13.7 0.4 1 23 133 155 133 155 0.96

5 15 1.7 1.4e+02 4.0 2.0 1 23 160 183 160 183 0.87

6 15 0.014 1.2 10.6 2.9 1 23 258 281 258 281 0.94

7 15 0.79 66 5.1 0.3 2 23 308 330 307 330 0.94

8 15 0.0065 0.54 11.6 3.0 2 23 353 374 352 374 0.96

9 15 0.00012 0.01 17.0 0.2 1 23 378 400 378 400 0.95

10 15 0.0062 0.52 11.7 1.0 1 23 405 428 405 428 0.97

11 15 0.0006 0.05 14.9 1.5 1 23 435 458 435 458 0.97

12 15 0.00011 0.0094 17.2 0.5 2 23 466 488 465 488 0.95

13 15 0.00051 0.043 15.1 3.1 1 23 494 516 494 516 0.97

14 15 1.8e-05 0.0015 19.7 1.7 1 23 522 544 522 544 0.99

15 15 0.0039 0.33 12.3 5.0 1 23 550 573 550 573 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0059	0.49	11.8	0.9	1	23	10	33	10	33	0.95
2	15	3.1	2.6e+02	3.2	0.6	2	23	61	83	60	83	0.91
3	15	5.5	4.6e+02	2.4	4.6	2	23	106	129	105	129	0.88
4	15	0.0014	0.12	13.7	0.4	1	23	133	155	133	155	0.96
5	15	1.7	1.4e+02	4.0	2.0	1	23	160	183	160	183	0.87
6	15	0.014	1.2	10.6	2.9	1	23	258	281	258	281	0.94
7	15	0.79	66	5.1	0.3	2	23	308	330	307	330	0.94
8	15	0.0065	0.54	11.6	3.0	2	23	353	374	352	374	0.96
9	15	0.00012	0.01	17.0	0.2	1	23	378	400	378	400	0.95
10	15	0.0062	0.52	11.7	1.0	1	23	405	428	405	428	0.97
11	15	0.0006	0.05	14.9	1.5	1	23	435	458	435	458	0.97
12	15	0.00011	0.0094	17.2	0.5	2	23	466	488	465	488	0.95
13	15	0.00051	0.043	15.1	3.1	1	23	494	516	494	516	0.97
14	15	1.8e-05	0.0015	19.7	1.7	1	23	522	544	522	544	0.99
15	15	0.0039	0.33	12.3	5.0	1	23	550	573	550	573	0.98

Sequence Information

Coding Sequence: ATGATACTCAAACATGGAGATAAGGGATATTTGTGCTGCTATTGCACGGAAGCTTTCCAAGAACCCATGAATTTGAAAGTACACACTTTGACGGAacatcaaaatgcagaaaagTTCCATGGAAACATTACAGCTAATGGACCATCTAGGTTCTTAGTCAAACTTGACATCACAAACCTAAAATGCATGCTTTGCAGCGCCACTATAGACTCTCTCCATGATCTGTTCGTGCATCTGACAGAGAAACATAATAAGAACTTCCACACTGATATACAAAATCAGATATTTCCTTTCAAGTTCAATGCAAAGGAACTGAAATGCTGCCAATGTACTAGTGACGTCGTTTTCGCCACGTTCAGCGCATTACACGAGCATATGCACAAGCACTACCGACACTTCGTTTGTAACGAGTGTGATGCTGGGTTCATCAATCACATATCATTATCCAGACATAGCGTTACTCACACGAAAGGAACCTTCGTCTGCCGACATTGTCCCTTTGAATTCGACAACGTGTTCAAGAGAAGAAACCACGAGATGGGCAGCCATAAGAAACctggcaaattaaataaatgccaTTTCTGCAATGAAGGTGGTCAACAAAGAACTGTTGAGGAAAAAGAAACGAACGGCAAAGAACTTACGGACGACATAGGtgaaaaagaactaaaaacaaCACCAAGAACCGAACTGTTAAAACATAGAAGTAACATTAAAGAAGTCCTTCTTCATTCTAATGCAACGCCTGTAAGACGGTACGGAGGGATCGGATACACGTGCTGCTACTGTCCTGACCAGTTCGAACACCCTGGAGACCTTAAGAAACATACTCTAGAGAACCACAAAAATATCTCGGAAGCaaactttatgaaaaacatGAACATGTCCGAATATATTGTCAAATTAGATATAACTTCATTGAAATGCAAGCTTTGCGACAGTAATATGGATACTCTAGATAACTTTATAGACCATCTTCAAAacgtacatgagaaaaaaatcGACAAGGATCATATAAACCATATCTTTCCTTTCAAATTCGGCAACGATTTACTCATATGCAATAATTGCTCGAACACTTTTAGCAAATTCAGGACCCTTGTTAGACATATGCATATTCATTATAGAAATTACATTTGCACCGTTTGCGACACCGGATTCGCTAACCGAAACTCATTAACCCAACATTTAGTTAATCACAAAACAGGCGCATTTGTTTGTGATTACTGTCCGAAGTTCTATCCTACTCTAGTAAAAAAAAGAATGCACGAAAGAACATCCCACACTCACGTCGATGCTACTTATAAATGTGGTTATTGTCAGGAAACTTTTAAAGATCATGGACAAAAGGAAGCTCATGTAACTACTGAACATGGTGTGGTATCATTGAAAAGTGTATGTCAAGCTTGCAACAAAGTATTTCCCAATAGGAAGAAACTTACCATCCACATTAAAAGAGACCATCTAATGGAGAGGCCACATAAATGTAAGGAGTGTGAAATGTCATTTTATTCCACGACAGGGCTAAAAAGTCATATGGTCAAGCATACAGGGTTGAAAGAATTTCAGTGCTCAGTATGTCTCAAGAAATATGGAAGGAAGAAGACACTGAATGCTCACATGCAGACGCATTCTGAGGAGAAGAGGTTCAAATGTGAAAAGTGTGCGCAGAAATTTACGCAGAAATGTACTTGGAGAGGACATATGAGATCCAAACATGgagaaattgtttaa
Protein Sequence: MILKHGDKGYLCCYCTEAFQEPMNLKVHTLTEHQNAEKFHGNITANGPSRFLVKLDITNLKCMLCSATIDSLHDLFVHLTEKHNKNFHTDIQNQIFPFKFNAKELKCCQCTSDVVFATFSALHEHMHKHYRHFVCNECDAGFINHISLSRHSVTHTKGTFVCRHCPFEFDNVFKRRNHEMGSHKKPGKLNKCHFCNEGGQQRTVEEKETNGKELTDDIGEKELKTTPRTELLKHRSNIKEVLLHSNATPVRRYGGIGYTCCYCPDQFEHPGDLKKHTLENHKNISEANFMKNMNMSEYIVKLDITSLKCKLCDSNMDTLDNFIDHLQNVHEKKIDKDHINHIFPFKFGNDLLICNNCSNTFSKFRTLVRHMHIHYRNYICTVCDTGFANRNSLTQHLVNHKTGAFVCDYCPKFYPTLVKKRMHERTSHTHVDATYKCGYCQETFKDHGQKEAHVTTEHGVVSLKSVCQACNKVFPNRKKLTIHIKRDHLMERPHKCKECEMSFYSTTGLKSHMVKHTGLKEFQCSVCLKKYGRKKTLNAHMQTHSEEKRFKCEKCAQKFTQKCTWRGHMRSKHGEIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906437;
90% Identity: iTF_00122756;
80% Identity: -