Asor012571.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000031.1:618752-632822[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.027 2.3 9.7 0.1 1 23 211 234 211 234 0.95 2 11 0.0017 0.14 13.5 2.6 1 23 241 263 241 263 0.99 3 11 0.34 28 6.2 0.5 1 23 267 290 267 290 0.96 4 11 6.2e-05 0.0052 18.0 1.2 1 23 328 350 328 350 0.98 5 11 0.005 0.41 12.0 1.2 3 22 362 381 361 385 0.89 6 11 0.00011 0.0091 17.2 0.4 1 23 426 448 426 448 0.98 7 11 0.016 1.3 10.4 0.5 2 22 457 477 456 481 0.90 8 11 2.7e-05 0.0023 19.1 0.4 1 23 489 512 489 512 0.91 9 11 0.00028 0.023 15.9 3.4 1 23 518 541 518 541 0.96 10 11 0.0029 0.24 12.7 3.3 3 23 550 571 548 571 0.91 11 11 0.025 2.1 9.8 3.2 1 23 577 600 577 600 0.96
Sequence Information
- Coding Sequence
- ATGGATTCcgaagataatattttttgttgcgGTTGCCTCAGCTCTGGCCGGAAAATGATACTTTTAGTCGAATACTGGAAGAAGCAGTCTTTTATGCAAATAATTAGCGAAACACTTTTTTCAGATGGAGAGAGTCTACCATTATGGTTGTGTTGGGAATGTGACGCACAGATGAACCGCTTCACCAAGTTCAAGCAACAAGTTAAAACATCATActctttattttatgattatgttaAACAGAATACGAACCTATCAAAACTACAACCGCCTCCAAGACTGACAACACACAAACTACACAACTTTGAACTACAACACAACACcgaccaacaacaacaaccatTCCAAATAATAACAACAGAAAACAGCGAGCAACTCAATACAAACTCCGCGGACGACCAGGAAGAATACAACAACACTGTGGACACAAACTCAGACGATGAGAAACTAATAAACATTCAGCCAAAAAAAAAGAGACATGTAAACAGAATAATTTTAGGGAAGATAAAAGTCAAGAAGAAGCGGAAAAAGAAGAAAGTGGAGTTGTTCAAAGAAGTAGAGTTAAGTAGAGAAGATTTGATAGAAGAGAGAAGGCTGGCGACGTTAAAAGAGGATTATGTTAACGCTATGTTCCGATGTGAGAGGTGCATTTTGTCATTTCCTAACGCTGAAGATTTGAAAGACCATGTCACTGTGAAACATGAATTGaattcaaaaaaatacaaatgcgAAATATGCGAATGTTCGTTCGCCTCCGAAGTGTCATACAACtatcatacaaacaaacacgcGCGGCGCTATgagtgcggcgcgtgcgcagaGCGGTGCAGCAGTAAGAGAGCTGTCATGAAACATTATGAGATGGTACATTATCACGGGCCATCAATAGAAATCGATGTTCAAAGTCATCATCAAAATGGGGCCACAACCGATGATGCAGACGGCACGGAagataatagTACAAAGCAGTCATCGGCGACATTTTCGTGCGAGTTTTGCGACAAAAGCTTCAGATGGAAAGCGTCTCTAAGAAAACACGTTGAAACGCACCGGATAGAGACCGGGCAGAAGCGGAAGCCGTATTGTGAACCGTGCAGGTTATCGTTTTCAAATACATCGAATCTTCAGAAACATGTGAAGACTAGTTCTAAACATCAGATAcaattaaaacttagGAAATTAACAGAAACTCTCCCCGAAGACTCCTCAAGCCCGGAGAATCATCAACAGCGTATAGACCAGATCAAATGCTCCGTGAACACCGCTAAGGAGAAGTTCCCGTGTCCCCAGTGCGATAAGAAGTTCCAGTGGCGAGGCAACCTGCTGAGGCATCTTAATAGTCATGTGGCGAGgGCCAACGGCGAGTTAGTCTGCGAGCCGTGCAACAGAACCTTCTCCTCTATAGCAACTTACAAGCAGCATATGAAAATAAGCAGGAAACATGTTAGTGAGAATGATttcaaATACATGTGCAGTGACTGTGGCAAGCGCTTCGCTAATAAGACTCGGCTCAAAGACCACGTAGATTGGGAACATTTGAAGAACTACGTCCATACGTGTCCTGTGTGCCAGAAGGTGTTCAAAAGCCACACGTCGCTGTACCTACACAAACAGGTGGTTCACAAGAAGGACAACGCGGAGCATTTATGTGATCACTGCGGGAAACCCTTCCCGAACCAAGCCAAACTCCGCTGCCACATGCTAGCCCTGCACAGCGCGCAGGCCGCGTACAAATGCAGCACGTGCGGCGCGCGCTTCTCCTGGCTCTCCTGTCTGTCGCGGCACAACAAGAAGCTACATGGTCAACGCTAG
- Protein Sequence
- MDSEDNIFCCGCLSSGRKMILLVEYWKKQSFMQIISETLFSDGESLPLWLCWECDAQMNRFTKFKQQVKTSYSLFYDYVKQNTNLSKLQPPPRLTTHKLHNFELQHNTDQQQQPFQIITTENSEQLNTNSADDQEEYNNTVDTNSDDEKLINIQPKKKRHVNRIILGKIKVKKKRKKKKVELFKEVELSREDLIEERRLATLKEDYVNAMFRCERCILSFPNAEDLKDHVTVKHELNSKKYKCEICECSFASEVSYNYHTNKHARRYECGACAERCSSKRAVMKHYEMVHYHGPSIEIDVQSHHQNGATTDDADGTEDNSTKQSSATFSCEFCDKSFRWKASLRKHVETHRIETGQKRKPYCEPCRLSFSNTSNLQKHVKTSSKHQIQLKLRKLTETLPEDSSSPENHQQRIDQIKCSVNTAKEKFPCPQCDKKFQWRGNLLRHLNSHVARANGELVCEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNYVHTCPVCQKVFKSHTSLYLHKQVVHKKDNAEHLCDHCGKPFPNQAKLRCHMLALHSAQAAYKCSTCGARFSWLSCLSRHNKKLHGQR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00906467;
- 90% Identity
- iTF_00425777;
- 80% Identity
- -