Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000025.1:3720009-3722717[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00039 0.033 15.4 2.7 2 23 163 184 162 184 0.98

2 7 1.6e-06 0.00014 22.9 1.6 1 23 190 212 190 212 0.98

3 7 9.1e-05 0.0076 17.5 0.0 2 23 219 240 218 240 0.97

4 7 2.4e-05 0.002 19.3 2.3 1 23 246 268 246 268 0.98

5 7 1.4e-07 1.1e-05 26.3 0.4 1 23 274 296 274 296 0.98

6 7 0.00054 0.045 15.0 6.9 1 23 302 325 302 325 0.94

7 7 3.6e-05 0.003 18.7 3.0 1 23 330 352 330 352 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00039	0.033	15.4	2.7	2	23	163	184	162	184	0.98
2	7	1.6e-06	0.00014	22.9	1.6	1	23	190	212	190	212	0.98
3	7	9.1e-05	0.0076	17.5	0.0	2	23	219	240	218	240	0.97
4	7	2.4e-05	0.002	19.3	2.3	1	23	246	268	246	268	0.98
5	7	1.4e-07	1.1e-05	26.3	0.4	1	23	274	296	274	296	0.98
6	7	0.00054	0.045	15.0	6.9	1	23	302	325	302	325	0.94
7	7	3.6e-05	0.003	18.7	3.0	1	23	330	352	330	352	0.99

Sequence Information

Coding Sequence: aTGACGGCGAATATTTGTAGAGTCTGTTTAAATCAAGAATtattagtaaatatttttaaaaagtcAGGATTTCTTACAATACCTACGAAATTAATGTCTATTGCGAAAGTACACatagCACCTGAAGATGGCCTTCCAGATGCAATTTGTTCAAAATGTGTCCAAAAACTAGACGACTGTATAGAATTTATTAAGCTATGTGAAACATCTGATGTAAAACTGAGGGCCTTATTAGAAAATAACTGTATGGAGAACAAATTGATGATGGACAATAGCATAGAAAATGATAACTACTTATCGGATAATACTTCATTATCACCTAAAAGTGAGACAGAACAAGTGCTGTTTATTGATGAAAGTATAGATCATAGTATTATGGACCATACAACTTTAACTGATGATTTGTTGGAAAATGAAACAATTATggatacaaaaaaagaaaatatcaatcattcaaaattaataagtaagaaGACTCGGAAACAACAGTGCTTCACTTGTGGGAAAGTTATGTCATCGAGATTTCGCCTCAAGACGCACATGCGGACACACACTGGAGAGCGGCCATTTTCCTGTCCACATTGCAGTAAGAACTTCTCATTAGCACAGAACCTGAAAGTGCATCTGAGAATACATACAgGAGAGAAACCACTGCAATGTCCAATATGTGGAGATGCATTTGCTCAGTCAGCAGGTTTGGCAGCACACAAACGCAAACACTCAGGCGTACTACCGTATGACTGTAAGCTGTGTCCGCGCGCCTTCCGAACTATCGGACACTTGCAGTACCACACACGGCGACACACAGGCGAAAAGAACTTTGAATGTGACACATGCGGTCGAGCCTTTATCACTCGCAGCGATTTAAAACAGCACTTGCTCACGCACACCGGAGCCCGGCCCCATGTCTGCTGCATCTGCGGACTGCGGCTCACCCGTGCCTCACACCTTaagagacacatgcatcttaccCACGAAAAAACTGTATACTCCTGTGATCACTGCCCAGcggaatttataaaaaaatgcgaGTTAGAAAAGCATATTAAAACTCACGACGATTAG
Protein Sequence: MTANICRVCLNQELLVNIFKKSGFLTIPTKLMSIAKVHIAPEDGLPDAICSKCVQKLDDCIEFIKLCETSDVKLRALLENNCMENKLMMDNSIENDNYLSDNTSLSPKSETEQVLFIDESIDHSIMDHTTLTDDLLENETIMDTKKENINHSKLISKKTRKQQCFTCGKVMSSRFRLKTHMRTHTGERPFSCPHCSKNFSLAQNLKVHLRIHTGEKPLQCPICGDAFAQSAGLAAHKRKHSGVLPYDCKLCPRAFRTIGHLQYHTRRHTGEKNFECDTCGRAFITRSDLKQHLLTHTGARPHVCCICGLRLTRASHLKRHMHLTHEKTVYSCDHCPAEFIKKCELEKHIKTHDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00667813;
90% Identity: iTF_00122701;
80% Identity: -