Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000029.1:1144209-1160429[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00046 0.038 15.2 0.2 2 23 144 165 143 165 0.93

2 10 0.00067 0.056 14.7 2.4 1 23 171 193 171 193 0.96

3 10 7.6e-05 0.0064 17.7 0.3 1 23 283 305 283 305 0.98

4 10 0.0007 0.058 14.7 0.0 3 23 384 405 382 405 0.90

5 10 0.029 2.4 9.6 0.0 1 23 420 442 420 442 0.93

6 10 1.6e-05 0.0013 19.8 0.2 1 23 473 495 473 495 0.98

7 10 0.00071 0.06 14.6 0.2 1 23 501 523 501 523 0.97

8 10 0.0004 0.034 15.4 0.3 1 23 529 551 529 552 0.95

9 10 0.011 0.9 10.9 1.1 1 23 565 587 565 587 0.96

10 10 0.033 2.8 9.4 0.0 1 20 740 759 740 762 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00046	0.038	15.2	0.2	2	23	144	165	143	165	0.93
2	10	0.00067	0.056	14.7	2.4	1	23	171	193	171	193	0.96
3	10	7.6e-05	0.0064	17.7	0.3	1	23	283	305	283	305	0.98
4	10	0.0007	0.058	14.7	0.0	3	23	384	405	382	405	0.90
5	10	0.029	2.4	9.6	0.0	1	23	420	442	420	442	0.93
6	10	1.6e-05	0.0013	19.8	0.2	1	23	473	495	473	495	0.98
7	10	0.00071	0.06	14.6	0.2	1	23	501	523	501	523	0.97
8	10	0.0004	0.034	15.4	0.3	1	23	529	551	529	552	0.95
9	10	0.011	0.9	10.9	1.1	1	23	565	587	565	587	0.96
10	10	0.033	2.8	9.4	0.0	1	20	740	759	740	762	0.93

Sequence Information

Coding Sequence: ATGGATGGAGAAGCTGAAGATTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGTCCAGGTGTTGTTGAGACCGAGGAAGTGATAACAGGACTAGATAACGCGCAGCACACAGAATATTCCAACATGACAGCCGAAGAGATGATGAGCACGGACCAAATGGCTGCGGAGAACTTAATGTTTTTATCGCAAGACGTAGTGGGCTATACAGAGACCGCTGAACTGGCAGATGATCCTAACGTGGAGTGTGTCACCGAAGAGGTCATTACAGACGATTGGGTGATTCCTGGTGGGCAGGAAAGGTACCAagttGAAGTTCCTATGGATCATTTGAATAACGCTGATGTGATTCTGAAAGAAGAAAATGACCTTGATGTTCCTTTACCAACAGATCAAGATGAATACACCGCGATGCGTCCTTGGCCCTGCGACTTTTGCTCACGGCGGTTCCGTAAGAAGGCCGCTCTCATGAACCATATGGTGGCCCATCAGAACGACCGGCCGCATGCGTGCAATCTGTGCGGCGTGCGATACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTTCACGCCTTTGTGCCTGAAAACCCCGATTCTATAGACTATGAAGATGTTTTAGACAATAACCAAATTGTAAAACCAAAGAAGAAACGAGGTCGACGGAAAAAGAATCCGGAGCCGGTCGAGGAGAACGGCATGTGGGAGAACATGACGTCGGCGCGCACGCAGCAGTGgtcgcggcgcgcgcgctcgccggcgcgcccgccgcgctcgccgcccgcgcccgcgccccccgcgccctcgccgccgccgccgcccagcGACCCCTCGCGCCCCTTCGTCTGCAGGCACTGCGGCGTCGGCTTCGCTAGGGAGAAGGCTTTGCAGTCACATGCCCGGGTACACGGCGGCGACTCGCCAGTGGAGTGCGGCTCGTGCGGCGAGCTGTGCTGGTCGCGCGAGGCGCTGGCCACGCACGCGGCCTCGCGCCACCCGCACCTGCCGCCGCGCGACCAGCCGCCCGACCCGCCTTACGAAGACTCCGACTCGGGAGACGACATGGAGTTCCGCCTATCCCCGCTGTCACACGGGGCGTCTGACCGAGCGGTGTACGACACGATGCGCGGGCCCGAGCTGTTCTGTCAGGACTGCGGCGTCGCCTTCCAGCGAGCCGACCTGCTGCGGAGACACGTGGCGGCGGCACACAGTTATAAGCGACACGACAGCTCCAGCAGCACGTGGGCGGAGCACACATGCGACGTGTGCGGCTCGGGGTTCGCCGACGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCCGAGCgcccgcgcgcgccgcacgcgcccaGGTTAAAAAGAATGGCTAGAGGTCGAAATAATACGTCATCGTCAAATAATTCACGGCAATTCCCTTGTCGAGTATGTGGCAAAGTGTTTGGTTCGCGGAGCTCGCAACAGATTCACATCCGTATCCACACGGGCGAGCGGCCTTACGCGTGTCGTTTCTGCTGGAAAGCGTTCGCGGACGGCGGCACGCTACGGAAACATGAAAGAATACATACAGGCGAGAAACCGTACGCATGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTGGTTCTACGTGAACATGTGCGCTCGCACCACTCCGCTCCCGACCGGCGTGCTAACGGTGGTCCTGCCTACTGCTGTGTAGTGTGTGGGCGCACGCTGCACTCGAGCGCGGAACTGGTGCAGCACCTCATACAGCACTGTGACGCCAACACGGCGCTCAAGAGACAACCTCAGACGGGGCCACGGAAGTACAAGAGACGACGAAAACTGAAGACGGAGCAATCTCCGGCGACGCCGCGCGACTGGGAACGTACTTCTCCCTCTCCCCCGCCCGCCTCGCGCTCCCCGTCGCCCGCGTCGCGCGCCTCCGACACGCCGCAGCTGTCGCCCGCCTCGCCGCCCTCCCCGCCCTCCCCGCCCTCCCCGCCCTCGCCCGCGTCGCCCgtgcggcgccgccgccgccgcgccgcgtcgcccgcgccgcgcccgcgcatGATCCACACGGAGGAGCCGCGCCCGGCcccgcgccggcgccgcgccccCGCGCCCCCCCCGCCCCCGCCGCGCGCGTCCCGGCGccgggcgccgcgcgcgccggccGCGGAGCTGCGCGCCGTGACGCCGCCGGAGCCTGCgccggacgcggcggggccctACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGTTGCTGCACGTGCCGGTGCACATCTga
Protein Sequence: MDGEAEDFNLQWEEEVEVKHSPGVVETEEVITGLDNAQHTEYSNMTAEEMMSTDQMAAENLMFLSQDVVGYTETAELADDPNVECVTEEVITDDWVIPGGQERYQVEVPMDHLNNADVILKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPENPDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRARSPARPPRSPPAPAPPAPSPPPPPSDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGSCGELCWSREALATHAASRHPHLPPRDQPPDPPYEDSDSGDDMEFRLSPLSHGASDRAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGSGFADALQLLAHAEGHAERPRAPHAPRLKRMARGRNNTSSSNNSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTEQSPATPRDWERTSPSPPPASRSPSPASRASDTPQLSPASPPSPPSPPSPPSPASPVRRRRRRAASPAPRPRMIHTEEPRPAPRRRRAPAPPPPPPRASRRRAPRAPAAELRAVTPPEPAPDAAGPYKCEMCALEFPRRDALLLHVPVHI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01064911;
90% Identity: iTF_00925081;
80% Identity: -