Asor015889.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000040.1:11425881-11434605[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00053 0.044 15.0 1.1 1 23 271 293 271 293 0.98 2 12 0.0017 0.14 13.4 1.3 2 23 301 322 300 322 0.94 3 12 0.84 70 5.0 0.3 1 23 326 348 326 348 0.94 4 12 0.00059 0.049 14.9 1.0 1 23 353 376 353 376 0.98 5 12 0.0059 0.5 11.7 0.2 1 23 380 403 380 403 0.94 6 12 0.0093 0.78 11.1 0.3 3 20 416 433 415 439 0.93 7 12 0.00098 0.082 14.2 1.8 3 23 449 470 449 470 0.98 8 12 0.21 17 6.9 0.7 2 23 490 512 490 512 0.97 9 12 7.6e-05 0.0063 17.7 0.9 1 23 523 545 523 545 0.97 10 12 2.5e-06 0.00021 22.4 2.0 1 23 551 573 551 573 0.99 11 12 2.1e-05 0.0018 19.4 0.6 1 23 579 601 579 601 0.98 12 12 1.2e-05 0.001 20.2 0.4 1 23 607 630 607 630 0.98
Sequence Information
- Coding Sequence
- atgGAAGTCGTAAAAGTGTGTCGTATTTGTTCCATAATGGACGTGAAATTACACGACCTGCGATCATACCCATTAGAATCTTATTATGAGTCTGTAATAGGAACCAATCCCCACTACACCAATTTGCCACCATTTGCCTGCTATGAGTGTGCAGCACTTGTGAGGAAGTTTTATTTCTTCAGGCAAAAATGTCTACGAAGCCACGCAGTACTCCATGGCGCTACAGATGCCTTTGGCAAGGTAAAACCTAAAGATGTGAAACTAATAGACAGAAATGGTATCCACATTGCCTCTAACCTCAAAATAACCATCTTGCCGAACATAGAGATATTAAAGCCCCATAAATCTAAAATAAACCAAGATATAAAACTTGAACCTGGCAGCGAGGATGACGACGATAAGTTTAAAATTGAAGATCATAACTATGCTTCCTTTAATTCAATGGATCCCACTATCtccagtgatgatgatgaacctcTATCACTTCATAAGGAGAAGAAAAGTCAAAATAAGGATACAGATGATGAGAAGGTGGACTTAAAAGAGGAGTTTGAAGGTCTCGAATTTGCTGTAGGCACAGAAGACTCCGGACATTCAATTGAAGTACCTAAAGTAGTTGCAAGGAAAAAGAAACGTGGGGTGAAAAAAGATACTTTTAAGCATAAAAAAGAGTTGTTAAACCCAAGCTTGGCTGGTGATGGCAAATGGAATGATTTCGCACAGTACATTAATGTTATAACTTTGACGTTGGAAGAGCAGAAAGAAGAGATACAGAAACGGAAGGAGTCAACCAACTACTTGAACTCTCCGTTCCAGTGTAATCTGTGCTATAAAGGGTTCATTGATAATGATGCCTGGAATCATCATGTTAGCAAACATGCTGTGAGCGCAGGTAGCATTGAGTGTGAAGTCTGTAAGTTTCGGTTTAAAACGAAGCGCGCCTATCAGAAACATGCGTCCAACCACGAGAAGAAATACGCCTGTAAATCCTGTCCATACATATCTACTAACACGACTCAAGCTAAGCAGCATCAAGGATGGCATAAAGGAATTACTTTCAAGTGCAAATTTTGTGATGAAATATTTACAATATGGACGTCTTACATGAGTCATGTGCGTATCAAACATCCGTCAGAGTTCATATGCGGCTTCTGCGGGTACTCATTCATCAGCAAGTTGGGCCTCGCCATGCACAAAACTATGATGCACAAGGATGTCCAAGAGAAAGCAGAAGAAGGTCCGTTCTGCGAAGAGTGTGACGTCAAGTTCATATCGACGGAGGCGTACAAGAGGCACATGGTCATGTCCACCAAGCACACCCAGACTACAGACTCTATTAAAGGCTGTCGGACTTGTGGCGCGACGTTCGAGAACTCCGAAGAGTTACGACTGCATCATCGTAAGGAACACACGCGGAAGAGACCCAAGAACTACGGGAAGAAACGTTCTAACCTCAGTTGGCCTGCCAAATGCGAACACTGTACAGAAGAGATCCCGAATGCTCGCGAGTATTGGACACATTTCCGCCGAGCACATCCCGACAAGAAGTACCCCATACAGAAGAACCACATATGTGATATATGTGGCAAAGGTTTCAGAGGTAACGCCTTCCTGATATACCACAAACGCACGCACTTCGAAGAACGCGCGTACAAATGTTCGCAGTGCGACAAAGCATTCTTCAACCGAACCAACTTGAACGTTCATGAGAAAACTCACTCCGACAACAGGCCTTATCCTTGCTCTGTTTGCTTCAAAGCTTTTAAGGGTAAAGGAGCCCTCAACAGGCATTTTAGAAGCCACACGGGTCAAAAACCTTACGAATGCGAAGTATGCGGCAAAGGGTTCTCTCAATCAAATAGTAGGAAACTTCACGTTCGCACGGTACATCTGAAGCAACCCGCGCCTTACGTTAGTCGCAACCGTCTTGAGAGACGAAAACAAAGCCCTAAGGAAGCGCCGGCACAGCAGTTTATATATTGA
- Protein Sequence
- MEVVKVCRICSIMDVKLHDLRSYPLESYYESVIGTNPHYTNLPPFACYECAALVRKFYFFRQKCLRSHAVLHGATDAFGKVKPKDVKLIDRNGIHIASNLKITILPNIEILKPHKSKINQDIKLEPGSEDDDDKFKIEDHNYASFNSMDPTISSDDDEPLSLHKEKKSQNKDTDDEKVDLKEEFEGLEFAVGTEDSGHSIEVPKVVARKKKRGVKKDTFKHKKELLNPSLAGDGKWNDFAQYINVITLTLEEQKEEIQKRKESTNYLNSPFQCNLCYKGFIDNDAWNHHVSKHAVSAGSIECEVCKFRFKTKRAYQKHASNHEKKYACKSCPYISTNTTQAKQHQGWHKGITFKCKFCDEIFTIWTSYMSHVRIKHPSEFICGFCGYSFISKLGLAMHKTMMHKDVQEKAEEGPFCEECDVKFISTEAYKRHMVMSTKHTQTTDSIKGCRTCGATFENSEELRLHHRKEHTRKRPKNYGKKRSNLSWPAKCEHCTEEIPNAREYWTHFRRAHPDKKYPIQKNHICDICGKGFRGNAFLIYHKRTHFEERAYKCSQCDKAFFNRTNLNVHEKTHSDNRPYPCSVCFKAFKGKGALNRHFRSHTGQKPYECEVCGKGFSQSNSRKLHVRTVHLKQPAPYVSRNRLERRKQSPKEAPAQQFIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00121701;
- 90% Identity
- iTF_00071741;
- 80% Identity
- -