Asor012569.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- ZFX
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000031.1:570394-602030[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.26 22 6.6 0.4 1 23 809 832 809 832 0.91 2 11 0.028 2.3 9.6 0.1 1 23 839 861 839 861 0.98 3 11 3.3 2.8e+02 3.1 0.9 1 10 865 874 865 888 0.78 4 11 1.5 1.2e+02 4.2 2.2 1 23 895 917 895 917 0.82 5 11 2.1e-05 0.0017 19.5 1.1 2 23 922 944 921 944 0.93 6 11 3.1e-05 0.0026 18.9 1.0 1 23 950 972 950 972 0.97 7 11 0.0064 0.53 11.6 1.3 2 21 984 1003 984 1008 0.93 8 11 3.8e-05 0.0032 18.6 1.6 1 23 1016 1039 1016 1039 0.94 9 11 0.022 1.8 9.9 0.2 1 23 1044 1067 1044 1067 0.97 10 11 1.8e-05 0.0015 19.6 2.8 2 23 1075 1096 1074 1096 0.97 11 11 1.8e-07 1.5e-05 25.9 1.4 1 23 1102 1125 1102 1125 0.97
Sequence Information
- Coding Sequence
- ATGGATAGCAGCGAACTCGAATACGACCAATCAAGTGAGATAGGTAATGTGAATAATGGCATAGAATATTGTAGTGAGATTATTAGTAACTGTAATAGTGAGAATATGGAGTTAACAGAAGAGGTTATACAAAATAGTGGGGTAAGCGACGTAGTGCGATCGAGTAAAAGAAGTAGACAGATGGACCAAGATGAAATGTGGACAAACATTACGAGACGGGGTAAACGTTTTGCCAGAACTAGTCATGTTCATGATGAGATAAGAGTACCTGAAGATAAAATAGAAATTAGCATAACGTCTAATGAAAAGTTGCCAAAACAGTTTGGATtagcaaaattattaaaaacagaaaatattccAGATATAATGAGTATAAAATATATCAATGCGTTTAAAGTTCTTATCCAGTTTAGTAACGAAGAGagtgcaaataaattaattgagtcAAAATGTTTGAAAGAAAAAGGAATTAGATGTCAGAAAACACTGGAGATTAGAGAAACTTACGGCGTTATCAAAGATATAGACTTAGAATCATCTGAGGAAGAAATACTTGAGGGTTTGAGCTGTGACACAGAGATCATAGGCACTAAAAGATTAAAACGTCGCAACTCAAATAGCGGACAATGGGAACCTGGAGAAACAGTCAGAATAACCTTTAAAGGGTCTTCCTTACCTTCCTACGTATACATCTTTGATACCAGAGTGAAAGTGAATCCCTACCAATTCCCCGTCACGCAATGCTCACGCTGTTGGAGATATGGGCATACAGTTAGAGTATGTTCATCAATCAAGGAGATATGCCCAAAATGTAGTAAGTCCCACCCTAATTGTGACACTACGGCCTATAAATGTAATAACTGCCACGGAAAACATATGGCGTTATCTCGCACATGCCCAATGTATGTAAAAGAAAGAAGGCTAAGAGAATTGATGGCAGAGTTTAACTGCACATACAAAAGAGCTTTAACACTGTACGTGCCGTCAGAACCATATTATGAGGGGAATTCCGAAGAAAAAGAACAGGAAACTGAAAAAGAACATCACCAAATGTTAAGTCAGGAAACAAGTACAGAAATGGGACCTATAACACAACCTCAAGATACGTATGCTAACACACTAAAGAAGACGAAAAGTTTAAATTCTAAAATTAAGAAGAAGTCTGCAATAATTCAACAAGACAGTAACAAAAAGGATGGGGTCAACCCGATGAATAATCAAAAAACAGATACCAGCTTACGACCGAAAATTACGGAATTTGAAGCTTTACTGAATCAGGAGAAAATTCACATAGCTATACTCAGTGAAACTTGGTTTGACCCAGAGAGTGTAGTCAGACTCAGCGGATACAATATATTCAGGGCAGATCGTGACGATGGGTACGGAGCTGATCAATATATTCCTACGATTAGAGTGAGCGAGAATCCTCTTCGGTCAGACAAATTCATACCAAAACCATACTGGAATCAAAATTTATCACATATTGTTGCACAGAGACGCCTTGCACTGGCAACTTTTAGAGGCAACCCCAACCCACAAAATCTTGAAGCTTTACAAAGGAAAGTGAGTGAGGCGCAAAGACTAATACGACAAGCCAAGAATAAATCCTTTCAGGAATTTTGCAATGACATAGATAGTGTAACTTCTTCAGGAGAAATGTGGAAGCGCATGAGATGGGTCAAAGGGTACAAATCAGCTACATCTTTTGTTGACCAAGGCAAAGCCGAAGGATTGTTGCGAAGTCTGGCCCCGGATTATGTATCTCCACCAACTCCTACATTTTCATCTTGTAATACACAATTGATCAACCCGGTTTCGCTGTGCAATTTGACTGCTGTAAGACTGCAGGTCTGTTGGGAGTGTAAAGCCTTGCTACAGAAGAGCATAGCCTTTAGAGAACAGGTCCAGGACTCGTACCGGATACTGCAAACTTATACTCAAGAGAATCTCCACGAATGCCTCCTATCGGACGTGAGCCGACCCCCTCGCCTGAAGATCCACTGCGCCGAACCCACCAGTATTTCCCCCTCAGATGGGTACGAAGCACTGCCAACGTACCCGGAGGTACCCATTATTTGTGTTAAGGATGAGCTCAAAGATGATTGGAATTGTGATAATGATGACACGAACATCTTAGAAGATGACACTGGCCCTCTATCGGACAGCTCGGAAACCACCAAACATTACGAGTCGGAGCTGCAAAGTATAATGTGTTCCATGAACAGGGAagacaagagagagagagatagcaAGACTAAGAGTAAAAGAGACAAGAAGATTAAAAGAGTCAAAGAGGATGTAAAAGTTAAGcTGAAACCTATGAAAGAGCGAGACCAGAAGATCCTAACCATAGAGTTGACATATGAAGAGATGTTGTTAGAAAGAGACAAAGAATCGGCAAAGGACTCGTATACGAGAGCGGAGTACAAGTGTGAGAGCTGCCTCATTGGCTTTACTTACAGGAAGTCTTATTCAGCTCATGTGGCCGCTAAGCATTCGGCGGAATTAGGCGACTACATCTGTCCTATTTGCAAAACGATAATACCATCGGTGGAATCATTTACAGCGCATTATAAAAGGCACATGAGAAGATATGAATGCAGTATTTGCCACAAAAGAACATTGGACATCAAAGTGATGCAGCAACATTATTACTCGACGCATGAGATATCGCTGAAGGAATATAAATGTAATCTTTGTGGAAAAATATCTAATTCCATAGACACCCACCGCTACCATAAAGACACGCACAAAGCAAGAGTACAGTGCACAGAGTGCGACAAAACGTTCAGACATAGAGCGGGACTGAAGAATCATAGACTGGCAGTGCATGAGTATCGGAACACGTTTCCTTGTACGATATGTGACAAAGTATTCCGATGGAAAACCAGCCTCAAGCGGCATTTAGAGAAACATGAAGTGCagGGCAAGTCATCATCAGCTGCAGCATATTGCTCCATGTGTAACGTGAGCTTCTCGTCCATATTTTCGTACCAGAGACACATGAAGAACAGCCTCAAACATGTTTCGCAGGATCAGCTCAAATTCATCTGTGATCATTGCGACAAACGCTTCGCCGACAAGACGAAGCTAAGAGATCACATTGAAGAGAAACATTTACACAAGACTTATCAGTGTCAAATATGTATGAAGCCTTCTAAAAATCGCGTTGGTTTGGACCAGCATATACGCAATGTGCACAAAGGCAGGCCAAACAATAAGATGTGCCACCATTGCGGTAAAGGATTTCCTaCCACAGTTCAGCTGGAGTCGCACATTCGCTCGCACACCGGCGAGAGACCATTCACATGCGAATACTGTCCGACGACATTCTCACAGCAGTCGAACTTATATAAACATATTAGACAGgtaCATCTGAACATCAAATCCAAACGCTATCCCATGTGTAAGAAGAGAGAAGAAAAGCTCCCAGACGTGCCCATATTAGACCATGTTCAACCCATGGATCCATACAGGCCGGTACCCATGATACACTATACTGCTGAAAAAGTTTTTGGAATGTGA
- Protein Sequence
- MDSSELEYDQSSEIGNVNNGIEYCSEIISNCNSENMELTEEVIQNSGVSDVVRSSKRSRQMDQDEMWTNITRRGKRFARTSHVHDEIRVPEDKIEISITSNEKLPKQFGLAKLLKTENIPDIMSIKYINAFKVLIQFSNEESANKLIESKCLKEKGIRCQKTLEIRETYGVIKDIDLESSEEEILEGLSCDTEIIGTKRLKRRNSNSGQWEPGETVRITFKGSSLPSYVYIFDTRVKVNPYQFPVTQCSRCWRYGHTVRVCSSIKEICPKCSKSHPNCDTTAYKCNNCHGKHMALSRTCPMYVKERRLRELMAEFNCTYKRALTLYVPSEPYYEGNSEEKEQETEKEHHQMLSQETSTEMGPITQPQDTYANTLKKTKSLNSKIKKKSAIIQQDSNKKDGVNPMNNQKTDTSLRPKITEFEALLNQEKIHIAILSETWFDPESVVRLSGYNIFRADRDDGYGADQYIPTIRVSENPLRSDKFIPKPYWNQNLSHIVAQRRLALATFRGNPNPQNLEALQRKVSEAQRLIRQAKNKSFQEFCNDIDSVTSSGEMWKRMRWVKGYKSATSFVDQGKAEGLLRSLAPDYVSPPTPTFSSCNTQLINPVSLCNLTAVRLQVCWECKALLQKSIAFREQVQDSYRILQTYTQENLHECLLSDVSRPPRLKIHCAEPTSISPSDGYEALPTYPEVPIICVKDELKDDWNCDNDDTNILEDDTGPLSDSSETTKHYESELQSIMCSMNREDKRERDSKTKSKRDKKIKRVKEDVKVKLKPMKERDQKILTIELTYEEMLLERDKESAKDSYTRAEYKCESCLIGFTYRKSYSAHVAAKHSAELGDYICPICKTIIPSVESFTAHYKRHMRRYECSICHKRTLDIKVMQQHYYSTHEISLKEYKCNLCGKISNSIDTHRYHKDTHKARVQCTECDKTFRHRAGLKNHRLAVHEYRNTFPCTICDKVFRWKTSLKRHLEKHEVQGKSSSAAAYCSMCNVSFSSIFSYQRHMKNSLKHVSQDQLKFICDHCDKRFADKTKLRDHIEEKHLHKTYQCQICMKPSKNRVGLDQHIRNVHKGRPNNKMCHHCGKGFPTTVQLESHIRSHTGERPFTCEYCPTTFSQQSNLYKHIRQVHLNIKSKRYPMCKKREEKLPDVPILDHVQPMDPYRPVPMIHYTAEKVFGM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -