Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000002.1:6666907-6690233[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.65 55 5.3 0.6 6 20 12 26 6 28 0.86

2 13 0.029 2.4 9.6 0.4 2 20 34 52 33 54 0.93

3 13 0.73 61 5.2 0.5 1 12 214 225 214 234 0.83

4 13 1.7 1.5e+02 4.0 0.0 1 19 329 347 329 347 0.97

5 13 0.00022 0.019 16.2 0.4 1 23 354 376 354 376 0.98

6 13 0.00037 0.031 15.5 0.6 1 23 390 412 390 412 0.97

7 13 0.00028 0.024 15.9 0.3 3 23 466 486 464 486 0.96

8 13 0.00065 0.054 14.8 2.0 1 23 502 524 502 524 0.98

9 13 1.5e-06 0.00012 23.1 4.5 1 23 530 552 530 552 0.98

10 13 0.00055 0.046 15.0 5.2 1 23 558 580 558 580 0.97

11 13 9.4e-06 0.00078 20.6 0.4 1 23 586 608 586 608 0.98

12 13 0.00045 0.038 15.3 1.1 1 23 612 634 612 634 0.98

13 13 0.0002 0.017 16.3 0.1 1 23 642 665 642 665 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.65	55	5.3	0.6	6	20	12	26	6	28	0.86
2	13	0.029	2.4	9.6	0.4	2	20	34	52	33	54	0.93
3	13	0.73	61	5.2	0.5	1	12	214	225	214	234	0.83
4	13	1.7	1.5e+02	4.0	0.0	1	19	329	347	329	347	0.97
5	13	0.00022	0.019	16.2	0.4	1	23	354	376	354	376	0.98
6	13	0.00037	0.031	15.5	0.6	1	23	390	412	390	412	0.97
7	13	0.00028	0.024	15.9	0.3	3	23	466	486	464	486	0.96
8	13	0.00065	0.054	14.8	2.0	1	23	502	524	502	524	0.98
9	13	1.5e-06	0.00012	23.1	4.5	1	23	530	552	530	552	0.98
10	13	0.00055	0.046	15.0	5.2	1	23	558	580	558	580	0.97
11	13	9.4e-06	0.00078	20.6	0.4	1	23	586	608	586	608	0.98
12	13	0.00045	0.038	15.3	1.1	1	23	612	634	612	634	0.98
13	13	0.0002	0.017	16.3	0.1	1	23	642	665	642	665	0.96

Sequence Information

Coding Sequence: ATGGGAGGCCAGCCGTTGAATTGCCCCGTTTGTTGCAGTACGACATTTAATTCTAAACAATCTCTAATTGAGCACTTAACTAATGCTTTAGAGAATGTCTATTGTCCTGTTTGTAATTACAAATGCTCCTCATTACCACACCTTGTAGAACATTTGGCTCAGGATAATTGCCAGCCAACTAGCAATGTTCATACCATTATATTTGAGCGCAGATCAGATGAGGACAATGTTGAAAACTCAACAGTTAATGGAAATTCTGAACTTAAAGTATTTCAGAGTGaaataaatattaatgatggGAGTCACTATACAGGCGAACAAACTTACGAAGCTCAGGTGGCCCTGAATGATGCCAACAAAATGTATGTGGAATTGTTTAGCAAGCAGTTGAAACCATGCCTTCAAACACGGGAGTTTAAACTGGTGAAAGAAAATGGGGAGAGCCGGTACATGATTGTCAATCAGGACGATACCGACTTGAATGGAGGAAACACTATTGTAACTAAACAAAATGTTGATGGAACTATATCACTGACTACTGTtaaagATATGAACCTGCAGCCAGAGAACTCCATTACACCAGACAATATACAGGAAACCCAGGAGATAGATAACCAAGAAGATTGTCAGGAGGAGATCTACAGCTGCAACACATGCAAAGTGTCGTTCTCATCTGTTATCGAGCACATACAGAACTACCATAATGATCAGGATGTTGTTGTCGAGGAACCAATGGAAGAGGGTCAGACTGAGTCAGTACCTGAATACGAGCCAATGGAGAATGAAGACACATTGGTGACCACTGACAAGCAGACACCTCGGCGAGTCATCACTGACACGGGCGATATTGTGGAGGAGCCACTCATGTTTAAATCTGGGGATCAAATAATTTCGCCGGATCCATTGAGTTTGGaTAAAAGCGGTCCCTATCACAAGGTAATCGTCAAAGAGGTGCCAAGGGAGAACGGGTTTGCAGCCAAAATGTACCAATGCTTAGCCTGTGACATAACTGTCGCCAATTTGGACGAGTTCAAAATACATCCATGTAAAGTATtgaaATACCCGTGTCTTTACTGTCCTGTGGCGTATGAAAACTCGAAATCTCTGTGTGCACACATGAAAGCACACAAAGTTAGAACAGatactaTCCTCCCTTTTCCTGTAAGATACGAATGTATTATATGCAGCACTGTTTTCCCAACCAATAAGTCTTTGAAACTACACAGACGGATGCACGATCCAGTCAAAGCACGTCCCATTGATCCTCCGGTAGAAAACACAGACGGTTCAGAAGTGAACGAAGACAGATACCTATGTACTTTCTGTGACAAAATGATCCCTATTGACTACAGAACTATCCATCAGAACTCACACAAAAGTTCGCAGAAAATGAACTGCGGAATTTGTAATAAGAAGTTCACATCTATAGAGTATCTTGAAATGCATACGAATGTACATAATGTGGATAAGGCGCCAATGAACAAACAAGATAAGAATCTACCATACAGCTGTGTGTATTGCAACAGAAGATTTGCGAGGCCGCACGAAAAGGTGAAACATGAAAGGATACATACAGgtgAGAAGCCCCATTCCTGCGAAATCTGTGGCAAGTCGTTCCGCGTGTCGTACTGCCTCACCCTGCACATGCGCACGCACACCGGAGCGCGCCCATACGCCTGCCCGCACTGCGGCAAGAGGTTCAAAGCACAcagcgtgtacaaccaccatCTGCTGACCCACTCGGAGGTACGCGCCTACAAGTGTCCGTTCTGTCCCAAAGCGTTCAAGACGTCTGTGCAACTCGCCGGGCACAAGAACTCACATACCAAGCCGTTTTCTTGTCAACATTGTAATAgGCCATTCGCATCCTTATACGCGGTTCGAGTTCACACAGAAACACATGCGCGTCAGAACAACCTGAAGTTCTCCTGCGAACTATGCGGCGCGAGCTACGCGAGAGCTTTCGCTCTTAAAGACCACATCAAGCAAGCGCACAATGAACAGGAACAAGCGCAATCGGTTCCTGGCGATGAAGACTGGTTGACAAAACACAATCCAGATACGGATGGAATACCGGCACTCAAACAAGATTTGACGCATGAGATAGACCTGGGAATGAGTGGCAACGAACTAATAGTTCCTTAA
Protein Sequence: MGGQPLNCPVCCSTTFNSKQSLIEHLTNALENVYCPVCNYKCSSLPHLVEHLAQDNCQPTSNVHTIIFERRSDEDNVENSTVNGNSELKVFQSEININDGSHYTGEQTYEAQVALNDANKMYVELFSKQLKPCLQTREFKLVKENGESRYMIVNQDDTDLNGGNTIVTKQNVDGTISLTTVKDMNLQPENSITPDNIQETQEIDNQEDCQEEIYSCNTCKVSFSSVIEHIQNYHNDQDVVVEEPMEEGQTESVPEYEPMENEDTLVTTDKQTPRRVITDTGDIVEEPLMFKSGDQIISPDPLSLDKSGPYHKVIVKEVPRENGFAAKMYQCLACDITVANLDEFKIHPCKVLKYPCLYCPVAYENSKSLCAHMKAHKVRTDTILPFPVRYECIICSTVFPTNKSLKLHRRMHDPVKARPIDPPVENTDGSEVNEDRYLCTFCDKMIPIDYRTIHQNSHKSSQKMNCGICNKKFTSIEYLEMHTNVHNVDKAPMNKQDKNLPYSCVYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACPHCGKRFKAHSVYNHHLLTHSEVRAYKCPFCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHARQNNLKFSCELCGASYARAFALKDHIKQAHNEQEQAQSVPGDEDWLTKHNPDTDGIPALKQDLTHEIDLGMSGNELIVP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01440338;
90% Identity: iTF_00123609;
80% Identity: -