Basic Information

Insect: Apamea sordens
Gene Symbol: -
Assembly: GCA_945859755.1
Location: CAMAOQ010000107.1:1950827-1980030[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00012 0.01 17.0 4.6 1 23 21 43 21 43 0.98

2 16 0.012 1 10.8 5.7 1 23 49 72 49 72 0.97

3 16 0.00054 0.045 15.0 8.3 1 23 78 100 78 100 0.98

4 16 2.9e-05 0.0024 19.0 0.9 1 23 106 128 106 128 0.98

5 16 0.00018 0.015 16.5 2.9 1 23 134 156 134 156 0.98

6 16 9.5e-05 0.0079 17.4 0.5 1 23 163 186 163 186 0.91

7 16 7.9e-06 0.00066 20.8 0.6 1 23 194 217 194 217 0.96

8 16 0.00049 0.041 15.1 0.6 2 23 224 244 223 244 0.97

9 16 0.00034 0.028 15.6 0.7 1 23 250 274 250 274 0.89

10 16 0.00019 0.016 16.4 1.4 1 21 280 300 280 301 0.95

11 16 0.0015 0.13 13.6 0.4 2 23 306 328 305 328 0.96

12 16 0.39 33 6.0 0.2 1 23 337 360 337 360 0.92

13 16 0.15 12 7.3 4.0 2 23 367 388 366 389 0.95

14 16 0.35 29 6.2 7.2 1 23 721 743 721 743 0.92

15 16 5.3 4.5e+02 2.4 0.4 2 23 754 774 753 774 0.73

16 16 0.025 2.1 9.8 0.9 1 23 900 922 900 922 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00012	0.01	17.0	4.6	1	23	21	43	21	43	0.98
2	16	0.012	1	10.8	5.7	1	23	49	72	49	72	0.97
3	16	0.00054	0.045	15.0	8.3	1	23	78	100	78	100	0.98
4	16	2.9e-05	0.0024	19.0	0.9	1	23	106	128	106	128	0.98
5	16	0.00018	0.015	16.5	2.9	1	23	134	156	134	156	0.98
6	16	9.5e-05	0.0079	17.4	0.5	1	23	163	186	163	186	0.91
7	16	7.9e-06	0.00066	20.8	0.6	1	23	194	217	194	217	0.96
8	16	0.00049	0.041	15.1	0.6	2	23	224	244	223	244	0.97
9	16	0.00034	0.028	15.6	0.7	1	23	250	274	250	274	0.89
10	16	0.00019	0.016	16.4	1.4	1	21	280	300	280	301	0.95
11	16	0.0015	0.13	13.6	0.4	2	23	306	328	305	328	0.96
12	16	0.39	33	6.0	0.2	1	23	337	360	337	360	0.92
13	16	0.15	12	7.3	4.0	2	23	367	388	366	389	0.95
14	16	0.35	29	6.2	7.2	1	23	721	743	721	743	0.92
15	16	5.3	4.5e+02	2.4	0.4	2	23	754	774	753	774	0.73
16	16	0.025	2.1	9.8	0.9	1	23	900	922	900	922	0.98

Sequence Information

Coding Sequence: ATGAAGGAAAAAGCTAAAAAGAAGGGTAATAAGCCTAAACCCAAACGAAAACTATTTGTTTATTCATGTCCACATTGTCGTAAGACCTTCGACAACTCCTCAAACTGGCACAGCCATGTCAAGCTCCATTCAACCGAGGAGCCGTACCACTGCGACCTGTGTGACTACAAGTGCAAGGTCCAGAAGTACCTCACCCGGCACGTGAAGAAGGCGCACACCAAGCCGACTGGCCATCAGTGTCCGGTGTGCGGGAAGTGCTTCCATTTTGATTGTAACCTGCGGGACCATATGAGAGTGCATACTGGGGAAAAGCCGTTCAAGTGCAATGTGTGCGACAAGGCGTTCAATTCTCGATACTCTCTGAGCGGACACAAGATGATACATACGGGAGAGAAACCATTTCAGTGTCAGTACTGTGACTACGCTTGCCGAGACAACTCGACGATAAGACGGCACATAGAGAGGCATCTAGGAATATCCAAGGACTATCCGTGTTCTATATGTAAAAAGAACTTCAAAAAGAAGGAGACGTTACAAATTCATGTGGATGAGGTGCATTTTGAACTGGATACCAGGAAGCATCCCTGTGCGCAGTGTGATAAAGTGTTCAAAACTAAAGGGACGCTCACTATACATGTTAACACAGTCCACAAGCAATCAAATCGTATCAAATGCGAGATTTGCGGCCGTCTGTCTACTAAAAACAACTTGCAGGCGCATATGAGACGACATATAGACGTTAAGCCTTACAAGTGTAGCTACAAACCTTGTGGGAAAAGATTTAAGGATAAGGGTGACCTCAAACGCCACGCCGTAATCCACTATCCAGAGAACCAGCACGTGTGTACCGGCTGCAACAGACGGTTCCCGCGCAAGTTCAGACTCACCAGACATATGCTGAACGGATGTCGAGTGCAGTGTCACTATTGTGGACAATTgTTTTCAGCCAAAATCTACCTCGCTCAGCATATAAAGAATGCCCACGGTCCCTATCCTAAGTCTAGAGAATATCTGTGTGACATCTGTGATATGGTCACCTACAGCAGAAGAGGCatcatacaacatctaaaatttgGTCATGGCACTGAAAAAGACACAAAATGTCAAATATGCAAAAAggattattttaaatatcaaacgTTAACGGAACATTATTTGAGTCACCACAACCTGAAATACACTATATTGGATAAAAAgaataaACCTAAAGTTGTGGTAAAAGAAGAACCTTTGGAAGAAATCGAAGAGATGGGTGACCCTCCAGACTTTATGTACGAGGTGGAAATACAGAAACATGACATTGATGATACCCCACCAGAAACACCACTATTTTCCCTACAGCCGACCTGCCCCGAACTCATTACCATAGACACGCTACGGCCGACCAGTCCCGAAAACTTCACCATAGACTCCGACACCATCACCTACTCAAAGAAGGTGCTATCAGAGGACATAtcacgaaatctgatagaacgTGATAGTACAACGGACGTGTTTGACGACTTCTTCATTGGACATGTGCTGAAGAAGCCTGAGAAAAAGCTTAAACTGCCAAAACAAATAGTAGATGAGGAGAAGAAGAAACGCGTTGAAAAGCGATTAGAGAAACTTCTAGTCCAGGCGAGAGTACGCAATCAGTGGGTGGTGTTGGAGAAACTACGCCGACAGTACAATCGACGAATCAAGACGGCGAACAGCGGGGAGGTTAGAAAAGAACAAAAATCCATTAGATACTTCAAAAAGccagaaaataataatgaatcgaCTAAATCAGAAAAAGACGCAAATAATGATAAAGACACCcttactgatgatgatgataaagcaaATAATGAAGGAACTGATGATGTGGACAGACAAAAGAATGATTCAGAAAAAGTAAACGGTGAAAAGGGTCATCTTAATGATGTAATCAGTGATGATAGAATGATTGATGATGAAGTGGCTGACGGAAATGGTGATGGAGTAACTAATGATGAAAAAATTGCTGACAAAAATTGTGATGACGTTGTAAATGATGAAGAGATTGCTGACAACAATGGTGATGATGGTGATaagataaatgatgatgatgaaaaggaTCTTGATTATAAAGACAGTGATTGTGAAGGTGATAGTGATGAACAAACCAATCCAAATGGAAAACTGAAGTTTAATACGCATCAGTGTTATATTTGTTTTAAgCTCTTCAAAACgaaaacagagttaaaaatccaCTGCAAACAGCATTTCGATATATGCAACgaaaaaatgctcaaaaaatGTCCCTTTTGCGGCTACGTCACCAACCTCACGATCACAAGACATATAAGACTCGTTCACAAAATAACTCTGGACATACCTTACGGACGAATTAAAGAAAAGGACACGCAGAACGGATCGAAATACGTCTTCGAGATCGATAAAGACTGTGACCTAGAAGTCATCCCCAGTATAAGCAACCTAAACAAAATCGCATCGATGAAGATCGACGAAAAAAATCGGAAATCGAAGAACATATTTCTAGGAACGACGAAGTTGGTCAAAAAGGGGGGGGATTGGATGGTGGAAAAGCAAAAAGTTGATATTAACAATGAGTTTTTATTGCCAGAGTTCTGCGAGGAAGATTATCAGGCTTTGAAAACTATAGGAGATAATTATTTAGAACAAATTAGAAGCTTGAGTATTATTGCAAAGAAAAAAGGCTTGAAAATCCTTTATCCCTGTGACGGATGTGACAAGATTTGTCTCACAATGAGCGCGTTAAAACTACATAGCAGAAAGCACGAGGCGAACCCAAAGAGATATAAACCTAAAGTGTGGAAGAACAAGATCTTAATTGGCTTAAACGGTAAATATAGTCacgtcaacaaaaaaaataacagaaaaaaatatggcgGCAATAATAATAGTGATGTTGCTAACCAAAATAGCGGCAAAATCAATGTCAATGTCGAGAAAAAATACCGTAAATTAGAAAAAATcgacaaaaaagaaaataaatccgATGAAGTGGCGAATCGTTTCGCCGATCCGAACCCCgtaaaaaataatcacaaatgtGACAGACAGCTTATTGAATTCTACCACAAGAACATCAAGGGAGGTGACATAGAATTCTGGCAGTTTTTGAAGATTTTCAACAAGATGAGCCGTGAAAATGTCAACGATTTTAAAGACTTGGAAAATCGATTCGATTTTGGTATGCATAATATCGCCCACCATGATGAGATTACTAACGAAAATACTGCAGAGTCAGATAAAGGAGAAGATACGGTAGAGGAAACCCAGGCTATacaaaaaataggaaaaaagaagaagaaagggtTTACTAGAGTAATTATGATTAGTAAAAAAGAGTATTTAAGAAGGATGGAGATTAAAAACCAAATGAGACAGAGAATAGAGCGGTCGAAAACATAA
Protein Sequence: MKEKAKKKGNKPKPKRKLFVYSCPHCRKTFDNSSNWHSHVKLHSTEEPYHCDLCDYKCKVQKYLTRHVKKAHTKPTGHQCPVCGKCFHFDCNLRDHMRVHTGEKPFKCNVCDKAFNSRYSLSGHKMIHTGEKPFQCQYCDYACRDNSTIRRHIERHLGISKDYPCSICKKNFKKKETLQIHVDEVHFELDTRKHPCAQCDKVFKTKGTLTIHVNTVHKQSNRIKCEICGRLSTKNNLQAHMRRHIDVKPYKCSYKPCGKRFKDKGDLKRHAVIHYPENQHVCTGCNRRFPRKFRLTRHMLNGCRVQCHYCGQLFSAKIYLAQHIKNAHGPYPKSREYLCDICDMVTYSRRGIIQHLKFGHGTEKDTKCQICKKDYFKYQTLTEHYLSHHNLKYTILDKKNKPKVVVKEEPLEEIEEMGDPPDFMYEVEIQKHDIDDTPPETPLFSLQPTCPELITIDTLRPTSPENFTIDSDTITYSKKVLSEDISRNLIERDSTTDVFDDFFIGHVLKKPEKKLKLPKQIVDEEKKKRVEKRLEKLLVQARVRNQWVVLEKLRRQYNRRIKTANSGEVRKEQKSIRYFKKPENNNESTKSEKDANNDKDTLTDDDDKANNEGTDDVDRQKNDSEKVNGEKGHLNDVISDDRMIDDEVADGNGDGVTNDEKIADKNCDDVVNDEEIADNNGDDGDKINDDDEKDLDYKDSDCEGDSDEQTNPNGKLKFNTHQCYICFKLFKTKTELKIHCKQHFDICNEKMLKKCPFCGYVTNLTITRHIRLVHKITLDIPYGRIKEKDTQNGSKYVFEIDKDCDLEVIPSISNLNKIASMKIDEKNRKSKNIFLGTTKLVKKGGDWMVEKQKVDINNEFLLPEFCEEDYQALKTIGDNYLEQIRSLSIIAKKKGLKILYPCDGCDKICLTMSALKLHSRKHEANPKRYKPKVWKNKILIGLNGKYSHVNKKNNRKKYGGNNNSDVANQNSGKINVNVEKKYRKLEKIDKKENKSDEVANRFADPNPVKNNHKCDRQLIEFYHKNIKGGDIEFWQFLKIFNKMSRENVNDFKDLENRFDFGMHNIAHHDEITNENTAESDKGEDTVEETQAIQKIGKKKKKGFTRVIMISKKEYLRRMEIKNQMRQRIERSKT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00758552;
90% Identity: iTF_00123595; iTF_00121689;
80% Identity: -