Asor024499.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Apamea sordens
Gene Symbol
-
Assembly
GCA_945859755.1
Location
CAMAOQ010000078.1:4819313-4834873[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 20 9.2e-05 0.0077 17.4 2.2 1 23 427 449 427 449 0.97
2 20 0.0048 0.4 12.0 0.6 1 20 455 474 455 477 0.94
3 20 2.4e-05 0.002 19.3 5.6 1 23 496 518 496 518 0.98
4 20 0.00011 0.0093 17.2 4.1 1 23 524 546 524 546 0.99
5 20 4.3e-05 0.0036 18.5 5.3 1 23 552 574 552 574 0.97
6 20 9.8e-06 0.00081 20.5 7.4 1 23 580 602 580 602 0.97
7 20 8.2e-07 6.9e-05 23.9 2.9 1 23 608 630 608 630 0.97
8 20 0.00012 0.0097 17.1 6.7 1 23 636 658 636 658 0.97
9 20 0.00012 0.0097 17.1 6.5 1 23 664 686 664 686 0.97
10 20 5.6e-07 4.7e-05 24.4 1.9 1 23 692 714 692 714 0.98
11 20 1.1e-05 0.00092 20.3 7.7 1 23 720 742 720 742 0.98
12 20 2.9e-05 0.0024 19.0 6.6 1 23 748 770 748 770 0.98
13 20 2.3e-06 0.00019 22.5 4.2 1 23 776 798 776 798 0.98
14 20 7.6e-06 0.00064 20.8 5.0 1 23 804 826 804 826 0.96
15 20 2.5e-06 0.00021 22.4 5.0 1 23 832 854 832 854 0.98
16 20 3.5e-06 0.00029 21.9 6.0 1 23 860 882 860 882 0.98
17 20 6.8e-05 0.0057 17.8 7.9 1 23 888 910 888 910 0.97
18 20 6.9e-06 0.00058 21.0 5.4 1 23 916 938 916 938 0.98
19 20 0.00084 0.07 14.4 0.3 1 23 945 967 945 967 0.96
20 20 0.36 30 6.1 4.9 1 23 979 1001 979 1001 0.99

Sequence Information

Coding Sequence
ATGAATCAGGATCACCATAATATGAATACGGGTGGTGGCCAGCCTCCGGGAGGTTCTGAGTCACAGGGCCAAAGAGTTCAGGCCACCCAGCAGCAACAGCAGAATAACTTGCCTGCCACGACATCTGCCACTGATTTGCGAGTGAACTCAGCTGCAGTGAACGTTGCTTTGTCTAGTGTCGCGAAATATTGGGTGTTTACAAATTTATTCCCCGGACCGATACCGCAAGTGTCTGTGTACGGATTGCCTGCCGGTGCCAGGATTGAAAATGGGAAGCCAGTCCAGGATCTTGGTCAAGCTCATGCCAGTATACTGAATGGGGATCCAAATATTATACTTGGGCATCATGCTGGACAGTCCCAAGTTACGGTATCTGCTCCTGGTGGACAGCAGATACCTGTCTCACAGATCATCGCCACACAGTCTGGACAAACTCATGAAGCACTCGTGGCCCATAGTCAGCAGCAAGCCGAGTTGGTCGCGGCTCAGGCTGCCGGCAACAACGCCCAGGTGTCAGTTAGTGCCGGCCAGGCCACTCACCAGCAGGTACCCAATAATCGGGTCGAGTTTGTACAACACCATAACATTGATATGGGCCACCATTCCCAACAACACATAATGCAGCAGCAACTGATGGCGCAGGCGCGACCAGATCACAACAACCAACAGATTCAACTGACGGTAAGCGAGGATGGCATAGTAACGGTGGTGGAGCCGGCGGGCACAAAGATGGTTGACAAGGAGGAACTTCATGAGGCCATCAAGATGCCCAATGACCACACGCTCACCGTACATCAGCTGCAGCAGATAGTGGGACAACAGGTATTAGACAGCGTAGTACGCATAGAGCAAGCGACCGGTGAGCCGGCGAATATCTTAGTGACCCACAATCCTGATGGTACGACCTCTATTGAAGCCAGTGCCGCCGACCCTCTGATTGTCAAGGATGAGAAGAGTGCTAATAAAATAGAGACCGCACAGTTCGCTATACCTGCTGAGATAAAGGATATAAAGGGAATTGACTTGAAGAATGTAGGAGCCATGGGCATGGAAGGTGCAGTCGTGAAGATATCAGCCGGCGCTTCAGAACATGACCTCCACGCGATGTATAAAGTCAATGTAGAAGATCTGTCACAGCTGCTTGCTTACCATGAAGTGTTCGGCAAACTTAATACGGAAGGCCAGCAACAACAAGCAAagGTAATAAGCGAGGTGGAAGTAGAAGTGGAAGCCGGGACTAGCGCAGCCATGTCTGAAGCAGAGTCCTCGCCCGGCCACCACTCGTGTGACATCTGCGGGAAAATATTCCAGTTCCGATACCAACTTATTGTTCATAGGCGTTATCACGGTGAAAGTAAGCCATTCACGTGTCAGGTTTGCGGTTCCGCATTTGCAAATCCTGTTGAATTGTCGAGGCATGGAAAATGTCATCTTGCCGGAGACCCGAACGAAAGACATGCCAAGAGAATGGCGCAAGATAAACCATACGCTTGCACAACTTGCCACAAAACCTTCTCTCGTAAAGAACATTTGGACAATCACGTTCGAAGTCACACTGGAGAAACTCCTTACAGATGCGAATTCTGCGCGAAGACTTTCACCCGCAAAGAGCACATGGTCAACCACGTACGAAAACACACGGGCGAAACTCCGCACCGATGTGATATTTGCAAGAAGAGCTTCACCAGGAAAGAGCATTTCATGAACCATGTTATGTGGCACACGGGTGAAACGCCGCACCATTGTACAATATGCGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGCGATCTCACACGAACGATACTCCGTTCCGATGCGAACTGTGCGGCAAGTCGTTCACGAGAAAGGAACACTTCACCAATCACATACTGTGGCATACGGGAGAAACCCCTCACCGCTGCGACTTCTGTTCCAAAACGTTCACTCGTAAGGAGCATCTCCTGAACCACGTCCGCCAACACACGGGCGAGTCGCCTCACCGCTGCAACTTCTGCAGCAAGTCTTTCACACGCCGTGAACACCTTGTCAACCACGTGCGACAACACACCGGCGAAACGCCGTTCCAGTGCGGATACTGTCCTAAAGCGTTCACAAGGAAAGATCACCTCGTGAACCACGTCCGTCAACATACAGGCGAATCCCCGCACAAGTGCTCGTATTGCACAAAGTCCTTCACTCGCAAGGAACACCTGACGAATCATGTGCGACAACACACGGGCGAGTCTCCGCACCGATGTACTTACTGCGCCAAGTCCTTTACGAGGAAGGAACACCTCACTAACCACGTTAGACAGCACACGGGAGAAACGCCACACAAGTGTACGTACTGCCCGAGGGCCTTCGCACGCAAGGAGCATCTCAACAACCACATCCGACAGCACACCGGCATCACTCCGCACGCCTGCTCCTACTGCAGCAAGAGTTTCACCAGGAAGGAACATCTCGTTAACCATATTCGGCAACACACGGGCGAGACTCCGTTCAAGTGTACGTACTGTTCAAAGTCGTTCTCTCGTAAGGAGCACCTCACGAACCACGTGAACCTTCACACAGGAGAAACACCACACAAATGTCCCTTCTGCACAAAAACATTTTCCAGAAAGGAACACTTGACCAACCATGTCAGGATTCACACGGGCGAGTCTCCGCATCGCTGCGACTTCTGTCAGAAGACGTTTACTCGTAAGGAGCACTTGACGAATCATCTGAAGCAGCATACCGGCGACACCGCACACGTCTGCAAGGTGTGCTCCAAGAACTTCACCAGGAAAGAACATCTTGTCACACACATGAGGTCGCACAGTTGTGGCGAGCGTCCATTCAGTTGCGGAGAGTGCGGCAAATCTTTCCCATTGAAAGGCAACCTACTATTCCATGAACGATCCCATGCCAAGAACAATGCTAATGCTGCCAATAAGCCGTACCGATGTGAAGTCTGCTCCAAAGAATTCCTCTGTAAAGGCCATTTGGTGTCTCATCGGCGCACACACGCGGAGTGGGTGGAAGGCGCCACGACCGGCGAGGCACCCGCTGAAACAGAAGACTGTACTGATAATAAGTGTATCAAAGTCGAACCAGAACGAACTGAAAGAAAACATGAAGTCAGgACGACAGTCGAAACGAGACCAGCTGAGACCAATGTCGCACAAAGTCAGCCAAACACAGCTACTGTGATGATAACCAATAATCAACAAGTGCGCGCGGCGACCGTGAGCGCggtgggcgcgggcggcgcggcgggcggcgcgggcgcgcccacgttcgcgcacgccgcgccgcaccacGCCGGCGCCAACATCGCGCACCACCCCGTCACCGTCAACTACTAG
Protein Sequence
MNQDHHNMNTGGGQPPGGSESQGQRVQATQQQQQNNLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPAGARIENGKPVQDLGQAHASILNGDPNIILGHHAGQSQVTVSAPGGQQIPVSQIIATQSGQTHEALVAHSQQQAELVAAQAAGNNAQVSVSAGQATHQQVPNNRVEFVQHHNIDMGHHSQQHIMQQQLMAQARPDHNNQQIQLTVSEDGIVTVVEPAGTKMVDKEELHEAIKMPNDHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAADPLIVKDEKSANKIETAQFAIPAEIKDIKGIDLKNVGAMGMEGAVVKISAGASEHDLHAMYKVNVEDLSQLLAYHEVFGKLNTEGQQQQAKVISEVEVEVEAGTSAAMSEAESSPGHHSCDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGSAFANPVELSRHGKCHLAGDPNERHAKRMAQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHFTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSYCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFARKEHLNNHIRQHTGITPHACSYCSKSFTRKEHLVNHIRQHTGETPFKCTYCSKSFSRKEHLTNHVNLHTGETPHKCPFCTKTFSRKEHLTNHVRIHTGESPHRCDFCQKTFTRKEHLTNHLKQHTGDTAHVCKVCSKNFTRKEHLVTHMRSHSCGERPFSCGECGKSFPLKGNLLFHERSHAKNNANAANKPYRCEVCSKEFLCKGHLVSHRRTHAEWVEGATTGEAPAETEDCTDNKCIKVEPERTERKHEVRTTVETRPAETNVAQSQPNTATVMITNNQQVRAATVSAVGAGGAAGGAGAPTFAHAAPHHAGANIAHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01030446;
90% Identity
iTF_01030446;
80% Identity
-