Asor002123.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000005.1:6470155-6472416[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-07 0.00012 22.5 0.1 4 38 18 51 16 56 0.90
Sequence Information
- Coding Sequence
- ATGGCACGGAAAAAAGTTTTACAGAGAAAAAGAGGCGGACATTCAGCTTCAAATATGCTGAAAGCCTTAAAGATGCATAGGGCAGGTGAAAGCATCCGAAAAGCTGCAAAAACTTTCAACATTGCCTATCCCACCTTACGCCGTTATGTTGCACAAAATTTGAACGTCGCTGATGAGGATCTTTCCGACAAAAGACTGATACCCAATTATGAAAACCACTTAATTTTTACTGCAGAACAAGAAGAAATTTACAAGACCTACGTTAAAGAATGTGCTTTGAAATTTTATGGCCTTACTTCTAAGGATTGCCGCAAAGTGGCATACGAAATGGCaaaaattaacaacataaaGATTCCCGATAGTTGGGAGCGAGATAAAACTGCAGGGAAAGAGTGGTTCCGGTCATTTAGAAAACGCCATGGTGACATATCCATCAAAAAGCCGGAAGCATGCAGCTTAGCCCGCGCGACCTCATTTAACCGGGAGACGGTAAAATCGTTCTTCGATAACTTGAAGACAGCAATGGCTCGCCACCCGTCCTTTAGTGACGGTTGCCGTTTATATAATTTAGACGAAACTGCCACCACGACTGTCCAACGTCCTCAAAAAGTGGTAGGTCCTAAAGGAAAGCATAACATTGCGAAAGTGACCAGTGGCGAAAAGGGAATATTAGTAACAACTTGCGCCATCATTTGTGCTTCAGGTCAAGCACTGCCACCTGCATTTGTTTTCCCAAGAAAAAATTTCAAGGATATAATGTTGAGAGGCGCTCCCCCTGGCTCTCTTGGTTTAGCACATCCTTCAGGATGGATGACATCTGATTTATTTGTAGAAGTGATGAAGCATTTCATCAAGCATAGCTCTGCTAGTCCAGAAAACCCAGCACTATTAATTTTAGACAATCACGAATCACACCTGTCTATCGAAGCGCTGGACATAGCTAAAAGTGCAGGAGTTACTGTCCTCACCTTATACCCCCACACCACTGCTAAAATGCAGCCGCTGGACGTTGGGATTAATGGTCCTTTTAAAGTATTCTATAACAGTGCGATCGATTCTTGGATGGTAAGGCATCCAGGTCAATCTATGACAATTTATACTGTGGCTGAATGCGTTGGAACAGCCTACGCTCGAGCCATGACACCAGTAAACATATCCGCTGCTTTTAAGAAGTGTGGCATATTCCCTTTTGATCCAGACGTATTTTCCGACATTGACTTTTTACCTTCAGATGTGACGGATAGACCTTTGCCATCAAAAGTGACGGACAGACCTTTGCCATCAAATGTGACAGACAGAATTTTGCCATCAGACAGAATGGAGCTCGAGTGTCAAGGGCCAGATCTAGTTCCAGATTTAGATTCGGAAAATGTTGAAATCCAATCTATTAAGTCTGATAACACATTTTGTGAAGACTTACCAGAAAGTCCATCATTGTTAGACACTGCAAACGAGGACGAAGCGTCAATTTTGGATTTACTGAATTATGAAACTGTAGATTTACCAATGACCACCACTTCAAAGCTACTTCCTCGGAATGTTCACAGCTCGCCTGTAGCAGGGCTATCGCAAAATGTCTCGTTTGTTTCACCCCAACAATTTATGCCTCCATTAAAAGCTGGACCacgaaatgaaaaaagaaaatctagAAAAAGGGGAAGGAGCAGAATAGTAACTGACACGCCAGAAAAATTGGAGCTTATAGAAGATAAAAAGAAACATCGAGAAAATAAAGTCAAGGTAAAAGTAGTAAAACGTACCGTGCTTCaggatataaaagaaaaaaagaatgtcccaaaaaagataataaaaaagaagaaaggcAAGAAGATCGATCTAACTGAGTCTACTTCCGAAGAAGAGTTTGAAATAGTACCAGAATTAAGTGAGACTGAAATCAGTGAAATGGACGATTCGGAAGACGAAGAAGTCTCAATAATTAGaggaaattttgaaaagttgCCCCGTAAACCAGTAGAAGGTGATTacgttttggtaatttttaatgCCAAGAATATTAAAGTTTATTATGTGGCAAAGATCATTGATGAGGATGAAGGAGACAATTATGAAGTTTCATTTATGCGGCTGATTAACAAAGAAACAATGAAATTCCGGATGCCATTTGAGCCTGATATGGCACTTGCTCAATTAAAGgatattaaaatgattttaccgTCGCCGAAAATTAATGGAACAGAGAGCCGAAACTCGACTTTTAGTTTCCCGATACGAGTCGCTCCCACTATAAACTTACGTTAA
- Protein Sequence
- MARKKVLQRKRGGHSASNMLKALKMHRAGESIRKAAKTFNIAYPTLRRYVAQNLNVADEDLSDKRLIPNYENHLIFTAEQEEIYKTYVKECALKFYGLTSKDCRKVAYEMAKINNIKIPDSWERDKTAGKEWFRSFRKRHGDISIKKPEACSLARATSFNRETVKSFFDNLKTAMARHPSFSDGCRLYNLDETATTTVQRPQKVVGPKGKHNIAKVTSGEKGILVTTCAIICASGQALPPAFVFPRKNFKDIMLRGAPPGSLGLAHPSGWMTSDLFVEVMKHFIKHSSASPENPALLILDNHESHLSIEALDIAKSAGVTVLTLYPHTTAKMQPLDVGINGPFKVFYNSAIDSWMVRHPGQSMTIYTVAECVGTAYARAMTPVNISAAFKKCGIFPFDPDVFSDIDFLPSDVTDRPLPSKVTDRPLPSNVTDRILPSDRMELECQGPDLVPDLDSENVEIQSIKSDNTFCEDLPESPSLLDTANEDEASILDLLNYETVDLPMTTTSKLLPRNVHSSPVAGLSQNVSFVSPQQFMPPLKAGPRNEKRKSRKRGRSRIVTDTPEKLELIEDKKKHRENKVKVKVVKRTVLQDIKEKKNVPKKIIKKKKGKKIDLTESTSEEEFEIVPELSETEISEMDDSEDEEVSIIRGNFEKLPRKPVEGDYVLVIFNAKNIKVYYVAKIIDEDEGDNYEVSFMRLINKETMKFRMPFEPDMALAQLKDIKMILPSPKINGTESRNSTFSFPIRVAPTINLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01532981;
- 90% Identity
- iTF_01532981;
- 80% Identity
- -