Asor005212.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000014.1:9458165-9459853[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-08 3.2e-05 24.3 0.0 14 42 27 55 16 58 0.83
Sequence Information
- Coding Sequence
- atggtaaataaatataaaagaaaaactacaaATGCTTCCTGGGTTGTTGAGGATATTATGAAATGGGCAATGGAAGAAGCTGGCAAGACTTCAGTCAAAGGTGCAGCTAAGAAATACGGCATCAACCTATCAACATTACAGCGGCACATCAAAAAAGGATGcccgaaaaaaaaacttggtagGTTCATCactgtttttaatgaaaatcatGAGAAAGAACTACTGGAATATGTCTTTCATATGGACTCACTCTTTTTTGGATTAACTAGAACTGATTTTTTGAAGCTTGTGTACCAATATGCTGAGATTAATCACATTCCTCACCCATTCAAGAATAATACCGCGGGTGAGGATTGGTTCGCCGGGTTTAAAATGCGACATCCTAATATGAGTCTTCGTCGGCCAGAACCAACATCGATAGCACGAGCCAGAGGTTTTAACAAACCTCAAGTTCAAAGGTTTTTCGATATACTAGAACAAGAGATTGAAAAACACAATATTGTCGCGACGTGGATATACAACGTCGATGAGACTGGGGTTCAAACTACCAGTAATAGGCCTCCCAGAATCCTTTGCAGATCGGGAAAAAAGCAAGTAGGTGTAATTTCAAGTGTTGAACGAGGTAAATTAACGACCATTGTATGCTGCTGCAATGCGGCAGGTTCGTTTGTACCACCTTTTCTAATTTTTGGCCGAAAGCGGATGGTGCCTAGACTTCTAGATGGGGCTCCACCTGGATCGGTAGCCAGTTGTACTGACAATGGCTGGATTAATGGCCCAACATTTTTGGAATGGCTACGTCATTTGGTGGATATGACTAGGCCCACAGAACAAAGAAAAGTTCTCTTGGTGATGGATAACCACGAGTCGCACAAAAATCTTCAAGCCTTAGAGTTTGCCTCGAAGAACCATGTGATTTTTGTGTCTTTTCcaccacatactacacaccgaTTGCAACCGCTCGATACGTGCGTGTACGGAccattgaaaatctattttgaGCAAGCCATTTCCTTGTTCCAAAGAACTCATGTTGGGCGTATCGTCTCACAATATGAAGTGGCAAGGTTGTTTAACGAGGCCTACATGAAAGCGGCCAGTGCCCATAATGCTATCAAAGGATTTTCCTCCACTGGCGTATGGCCAACCAATCGTCATATTTTTGATGAATCTGATTATCTACCATCAACGTTGACTGACAGACCAGAACCAATTCAAAATGAGGATGTGCCAGTGCCTAATGAGCCAGAGTTGCCTGCTATCGAAACAGAAAACAGCATTGAAATACCTTTCGCAGTAAATGACGATATTCGATTATCCATTGATTCTGATCGCACCATATCACCCTCTGTTTTGGACGAGCTTTTGAATCGTAATTCTGTCTGCAAAACTCCAACATTGATGGCAGGCTTTGAGCTTATGACGCCACATTCTGATAACCCCTTGACTCCAGAAACTATTGAAGTTAGTAGTAACAATACTAATAAGCAGGACTCGCAACCAGAAATTGCAGCACCCCATGTAACTCCAATAGAAATCAGGCCATCACCCAAAATGATGGTGAATACCACCAACACTCGCAGACGAAAAACACAAAGAGCCGAAATACTTACAAGTACGCCAATAAAAGATCAGCAACgagaaaaagaagagaaaattgccatgttcgtgaacgggcgccatcagtag
- Protein Sequence
- MVNKYKRKTTNASWVVEDIMKWAMEEAGKTSVKGAAKKYGINLSTLQRHIKKGCPKKKLGRFITVFNENHEKELLEYVFHMDSLFFGLTRTDFLKLVYQYAEINHIPHPFKNNTAGEDWFAGFKMRHPNMSLRRPEPTSIARARGFNKPQVQRFFDILEQEIEKHNIVATWIYNVDETGVQTTSNRPPRILCRSGKKQVGVISSVERGKLTTIVCCCNAAGSFVPPFLIFGRKRMVPRLLDGAPPGSVASCTDNGWINGPTFLEWLRHLVDMTRPTEQRKVLLVMDNHESHKNLQALEFASKNHVIFVSFPPHTTHRLQPLDTCVYGPLKIYFEQAISLFQRTHVGRIVSQYEVARLFNEAYMKAASAHNAIKGFSSTGVWPTNRHIFDESDYLPSTLTDRPEPIQNEDVPVPNEPELPAIETENSIEIPFAVNDDIRLSIDSDRTISPSVLDELLNRNSVCKTPTLMAGFELMTPHSDNPLTPETIEVSSNNTNKQDSQPEIAAPHVTPIEIRPSPKMMVNTTNTRRRKTQRAEILTSTPIKDQQREKEEKIAMFVNGRHQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01028227; iTF_00354022; iTF_01209197; iTF_01209194; iTF_01361554; iTF_01429881;
- 90% Identity
- iTF_01028227; iTF_01209194; iTF_01361554; iTF_01429881;
- 80% Identity
- -