Asor004816.1
Basic Information
- Insect
- Apamea sordens
- Gene Symbol
- -
- Assembly
- GCA_945859755.1
- Location
- CAMAOQ010000014.1:3201744-3202859[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.4e-08 1.1e-05 25.8 0.0 4 45 17 58 16 58 0.94 2 2 2.8 2.3e+03 -0.8 0.0 14 23 128 137 126 137 0.83
Sequence Information
- Coding Sequence
- ATGGAACTTTCGCAAAAAAGAAAACGGGGCTCAGGTTGGACTCAATTTGACCTTCAGAATGCCCTTGATGATGTTAAAAACAACAGAATGTCTGAGCGTGGAgcagcattaaaatataatataccgaGGCGAACATTAAAAAATCACATCAAATCTGGGAGCGAGGTGAAGAGGATGGGAAGAAAAACTGTTTTCACCGACACACAGGAGAAAGAATTGGCAGAACGAATCAAGAAATTCTCGAATATAGGTATGCCTTTAACcccaaaaataataagaaagcaAGCATATTTATTTTGCGAAAGgaacaatataaaaaatccTTTTAGTGATAAAACCTCGACTGCGGGCAAGAAATGGCTTAAAAATTTCCTCGCACGTAACAAAGATATTTCACAAAGAAAAGCACAATTCATGAACCCTGCGAGGGCTCAGaaactaaataaacaaattgttttGAAACATTTCAATGCCATTCGCGAGATCTATAACGAACTGAATATTGACCAACACCCAGAAAGATTATATAATGTCGACGAAAAGGGATGCCGTTTAACtctacacaaacaacaaagaGTCTTAGCTGGAAAAGGTTCTCGCAGGGTACACCTTATAGCGCAAGAACACGCAGAAAATGTAACTATTGCACCCTGTGTGAATGCTACTGGGAACTTCATTCCACCAATGATTGTTTTTAAAGGAAAAAGACTACGGGAAGAATTTTTGGAGAATTTACCAGCCGGATCTTTGGTGAAAATGGCACCAAAAGGTTCCATGACGACAGAACTCTTCGTTGATTTTATTGAGCATTTAGCCAAACACAAATCTCCAGGAAAATGTTTGTTGATTTTTGATGGCGCGTCATCCCATCTGGACTACAAAATTGTCGATGTTGCAGAAAATCATGACATTGTTCTGTATTGTTTGCCATCGAACACAACCCACGAGCTCCAACCACTTGATAAATCAGTAAACAAGTCATTTGAACATTTTTGGGATGAAGAGGTACTACTTTTTACTTACCAAAATCCACAGAAGAAACTCACCAAAGCacgttttaataaaatctttacaAAGAGTATGGACAAAATGCATGACCCACAACAATATTGTTAA
- Protein Sequence
- MELSQKRKRGSGWTQFDLQNALDDVKNNRMSERGAALKYNIPRRTLKNHIKSGSEVKRMGRKTVFTDTQEKELAERIKKFSNIGMPLTPKIIRKQAYLFCERNNIKNPFSDKTSTAGKKWLKNFLARNKDISQRKAQFMNPARAQKLNKQIVLKHFNAIREIYNELNIDQHPERLYNVDEKGCRLTLHKQQRVLAGKGSRRVHLIAQEHAENVTIAPCVNATGNFIPPMIVFKGKRLREEFLENLPAGSLVKMAPKGSMTTELFVDFIEHLAKHKSPGKCLLIFDGASSHLDYKIVDVAENHDIVLYCLPSNTTHELQPLDKSVNKSFEHFWDEEVLLFTYQNPQKKLTKARFNKIFTKSMDKMHDPQQYC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01158764;
- 90% Identity
- iTF_00843464;
- 80% Identity
- -