Aepo022557.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382254.1:5872924-5882827[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.98 70 4.6 0.3 3 23 29 50 27 50 0.89 2 18 1.2 84 4.3 1.0 2 20 75 93 70 97 0.57 3 18 0.00025 0.018 15.9 1.7 1 23 119 141 119 141 0.98 4 18 0.083 5.9 7.9 1.9 1 21 145 165 145 166 0.92 5 18 0.18 13 6.9 1.2 2 20 179 197 179 199 0.91 6 18 0.00016 0.012 16.5 1.4 1 23 206 229 206 229 0.95 7 18 0.00019 0.014 16.2 3.0 1 23 236 259 236 259 0.97 8 18 1.6 1.1e+02 3.9 0.4 3 23 305 326 303 326 0.94 9 18 0.43 31 5.7 1.5 2 23 349 370 348 370 0.95 10 18 2.1e-05 0.0015 19.3 1.5 2 20 375 393 372 395 0.88 11 18 0.56 39 5.3 0.7 1 23 432 455 432 455 0.87 12 18 4.5 3.2e+02 2.5 4.0 2 23 485 506 484 507 0.92 13 18 4.7 3.4e+02 2.4 0.7 2 23 534 556 533 556 0.93 14 18 1.2 86 4.3 6.7 1 23 581 603 581 603 0.95 15 18 0.32 23 6.1 3.2 1 21 607 627 607 630 0.95 16 18 0.58 41 5.3 0.2 1 21 635 655 635 656 0.94 17 18 2.5 1.8e+02 3.3 2.5 3 23 664 686 663 686 0.86 18 18 0.00061 0.043 14.7 1.7 1 23 693 716 693 716 0.96
Sequence Information
- Coding Sequence
- ATGTTCATCGCGCGACAGAACGCCAAAACGATGATAGAGTATACGACAGCTTACCCCTTCAAGCTGCCAGAATCTTCCATGGTTTGCGTGTACTGCTGTGATAGCTTCCCAGACCCCGCGAAGTTTAGGGAACACATGAATTTAGAGCATCAGGACTTCAAAGTACGAATGGCTTTTATCCACGTCGCCGAAGCTTCCGTTAAAGTAGATTGCACTGACCTTAAATGTAGAATTTGCTTTGAAACTTTATCTAATTTAGAACAAGCCGCAGACCATTTATTCAAAAAACATAACAAAAACATAAACCCAACACATGACCTAGGCATGCACCCGTTCAAAATTTATAAGGATAAATATTCTTGCGCGATTTGTTCAGAGAAATTTTCAACTTTGGCGTTGCTGAGCAAACACACGCATACACACTTCGTGCAGTACACCTGTGATGCTTGTGGCAAGTCCTATGCGTCATTGACTTCTCTACACTGCCATCTTCGATACAACTGCGGCACAGAGTCCGATAAAAATAACAAAAATAGATGCAGAAAATGTAGAAAAAATTTCACCTCTGCAACGGAACGACTGAATCACTTAGAAAAATCGCTGCGATGTCGCCAACACGTATGTAATATTTGTGGAGAGAGGTTTACCACTTGGAATATGAAGCAGAATCACCTGAAGGAGACACATAACGTTCCCCAGAAGACCTATAATTGCCCTGAGTGTCACTTAGTTTTTAATAAACGGGATACCCTTCGGTTGCATTTCAAAACCACCCACACGAATGACTACGTTGAATGCTCTTACTGCGAAAGAAAGAAGCATATGGATGACGACCACGAAGTGGTCAACGCCAGGGTTGCATTCTCACACCTTCACGAAGGATATATAAAGGCCGATTGCACGGATATGCACTGCAGAATATGCCTTGAAACTTTCAACAAAATCGAAGACGCAGCCATTCACTTAAACAAAGTTCATAAACAAAGTATCGACCTAAATCACGATATAGGCCTTCAGCCTTTTAATATACAGAATGACAAGTTATCCTGTGCCGTTTGCCACGACAAATCGTCCAATATTCGGAGTTTGAGCCGACATATCCAAAAACACTTCTTCCAGTGCACCTGCGAACTTTGCGGCAAATCTTTCGCGTCTTCTACCTCCTTGCAAAAACATCTCGAGTTCTCCTGTCCTTTTGTACCGAAGCAGAGGAGATGTAGGAAGTGCAAAGTTGTTTTATACTCCACTGAAGATCAGAAGAGGCACTTTGAGGTGTCCAGACAGTGTCGACAGCACATATGCTCGGTTTGCGGTGACAGATTTAGCACGTGGAAGATAAAACGCAGCCATATGGAGCAAGCACACGAACCACATTTATGGGCGAAAGAGAACGCGGAGATTGTGTTGCAATATTCAACCCTGTACCCATTCAGATTGCGGGGGAAAGCTATCACTTGCGTCTACTGCTGCGAAGGCTATGAGGACCCCACGCATTTCAGAAGACACTTCGACGTCCACCACCAAGAGTTCACCATCGGCACCGCATTCCACCACATGAGTAGCTTAAAAGAATACCTCAAAGTCGATATTTGCAACCTAAAATGCAGACTGTGTTCGCAACCCTGTGAGAAAATTGATGATGTCGCTCAGCACTTGAAGGAGTCACACTCGGATGTTGCAAAGAAATTAAACCTCGAATTCGATGTGGGTTTGCAACCTTACAAGTTGGTCAACAACAATTATTGCTGCTACCACTGCGGCAAAAAAATGCCCACTCTAATCAAGCTATGTCGTCACACGATCTTGCATTATCAACGGTTCACTTGTGACACGTGTGGTCGCAACTACCTCACACATGAGGCTTTAAAATACCACATTAAATGCATCCATGCAGTTACGAAACACGTGTGTAGGAAGTGCTGGACAGAATATCCCACACTGGAGCAAAAGAAGGCACATGTAAGGGCATCAAAACCTTGCTGGACCTTCTGCTGCATAGTCTGCGGCGACAGATTCCAATCCTGGGAACATAAGCAGAAACACTTACAAGCAGAACATGGCTACGAAAAGATAGTCTATAACTGTCCTGATTGTGAAGAAAAATTCACATCGAGAAAGTATTTTTACATGCATTATAAGCTCGCTCATACTGATGAAGGATTCCAGTGCGCTTGCTGTGGACTCAAGTTTAATACGCAAAAAAGACGCCGCAAAGGCGCAACGCTGAAATTATACTAA
- Protein Sequence
- MFIARQNAKTMIEYTTAYPFKLPESSMVCVYCCDSFPDPAKFREHMNLEHQDFKVRMAFIHVAEASVKVDCTDLKCRICFETLSNLEQAADHLFKKHNKNINPTHDLGMHPFKIYKDKYSCAICSEKFSTLALLSKHTHTHFVQYTCDACGKSYASLTSLHCHLRYNCGTESDKNNKNRCRKCRKNFTSATERLNHLEKSLRCRQHVCNICGERFTTWNMKQNHLKETHNVPQKTYNCPECHLVFNKRDTLRLHFKTTHTNDYVECSYCERKKHMDDDHEVVNARVAFSHLHEGYIKADCTDMHCRICLETFNKIEDAAIHLNKVHKQSIDLNHDIGLQPFNIQNDKLSCAVCHDKSSNIRSLSRHIQKHFFQCTCELCGKSFASSTSLQKHLEFSCPFVPKQRRCRKCKVVLYSTEDQKRHFEVSRQCRQHICSVCGDRFSTWKIKRSHMEQAHEPHLWAKENAEIVLQYSTLYPFRLRGKAITCVYCCEGYEDPTHFRRHFDVHHQEFTIGTAFHHMSSLKEYLKVDICNLKCRLCSQPCEKIDDVAQHLKESHSDVAKKLNLEFDVGLQPYKLVNNNYCCYHCGKKMPTLIKLCRHTILHYQRFTCDTCGRNYLTHEALKYHIKCIHAVTKHVCRKCWTEYPTLEQKKAHVRASKPCWTFCCIVCGDRFQSWEHKQKHLQAEHGYEKIVYNCPDCEEKFTSRKYFYMHYKLAHTDEGFQCACCGLKFNTQKRRRKGATLKLY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -