Aepo003506.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382255.1:4982823-4995000[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.4 1e+02 4.1 0.1 1 23 183 206 183 206 0.91 2 10 1.9 1.4e+02 3.6 0.5 1 23 238 261 238 261 0.94 3 10 0.0037 0.26 12.2 4.0 1 23 304 326 304 327 0.94 4 10 2.6e-06 0.00019 22.1 1.7 1 23 331 353 331 353 0.97 5 10 0.28 20 6.3 0.3 2 23 361 381 361 381 0.93 6 10 0.033 2.4 9.2 2.4 1 21 387 407 387 412 0.94 7 10 2.7e-05 0.0019 18.9 0.7 1 23 420 443 420 443 0.96 8 10 2.8e-05 0.002 18.9 2.4 1 23 449 472 449 472 0.98 9 10 3.1e-05 0.0022 18.7 0.3 3 23 484 504 483 504 0.96 10 10 3.8e-05 0.0027 18.5 2.0 2 23 511 533 510 533 0.96
Sequence Information
- Coding Sequence
- GAGGGATTCTATAAGGACACTGCAAGTTTATTCATATGCTGGGAGTGTAGAGCCGTTATGTGCAGGATCACACGGTTCAGGAAGCAGGCCTGCGCTGCACAGAGAGAGCTGACGAGTATTGCTGATGGGAGAACTCATATTCAAACAACCAGCCTATCCCGCCTCACCACACACCATAAGACTACCTACCAAAAAGTAATCTCAGAATCAAACACTACTCCAACAGACAATTTCATAGACTGCGGTCTAACCCCAGACATTAAAAGTGAAAGTGAAGAGGACATACCTCTATCAGAACTGCACAGCAACTGGCTCTCAGACAACGAGACGGAGGTAGCCATTCAAACCATAGACTGTAAAGAGGAACTGTCAAATTCAAAAGACACCATAGACTATAATGAGGATTTATTGTTCAAGTTGAAAAAAAAGAGGAAGAAAATAAAAAATGGGAAGAAAAGTTATTTTTCTACTGCTTTGTTAAATGAGAGTGAGTTGGAAGAAATTAGGAATAATAATAAAATGGCGATGAATTTTGTTGATGCAGGGTTTAAGTGTGATAGTTGTATTGAAGCGTTTGGAAGTCAAGAGGAATTGGATGAGCATAATTCTTCTTTACATGAAGAGAAACCAGACCACCTGCAATGCGATATATGCCTAGTCTACACTCCCATAACGTCATACCATGACCACAGAGAAGCACATTACCATAGACACATTTGTAAATTTTGTGTGTATACAGCTTATAATATAAATGATATGTTGTCACATTTGAGGAGCGGACATGCTATGAAGAATTTAGTGTTACCTGGGAAAAGAAAAAAGGCTCGCCACAAAACTGCAGAAGATTTAAACCCTGGTTCAAAACCTCGTCGAAAACCCTCCATGCTCGACAAGAGAACGCCCTGCGGATATCTGTGCACTGAATGTAATAAATATTTTGACAACAAGAATCAAAGATGGAAGCACGTACAGCGTCACCACAGGGAAGGTTACAAATGTGGTACGTGCGGCAAGAGATTTGCTTTCAAGAACAACCTGACGAGGCATGAGCAGCTCCACCAAGGCCCCCCACCCCGGGAGGAATGCCCCGTCTGCCACAAGATGATCCGAACAGACCTCGTGAAAGTACACGCTCGGATCCACGCAGACAGAGAACGGTACACCTGCGCGGCGTGTGCCAAGTGCTTCGTCAGCCGCGCGTCCTATGAGCACCATCTGAAGTACACCCAGGCACATGCACAGACTGACTTACACAAATATAAGTGCTCGCTATGTGACAAAGGCTACCGGTCGCGCGGCGAGCTGAGGGACCATGTCAACTATCAACACATGGGGAAGACACAGCACAAATGCCCTGTTTGTGGGAAGGCATTAGCAACTCGTCGCTGTGTGACCAGACACATGCGCCGCGCGCACGACGGAGTCAAGGAAAGCGCCAAAGACAAGATATGTCAACAGTGTGGGAAGGCGTTCAGGGACAAGAAAGGCCTCCGCGAGCACGAACTAATCCACACAGGCGAGCGGCCTCTCTCGTGTGAGATCTGCGGCTGCACGTTCAGACAGAGCGCGTCGCTGTACACGCACAGGAAGCGAGTACACAAGATAAATACCAGCGTTAAGAAGGTGACGCTGCTGGAATAG
- Protein Sequence
- EGFYKDTASLFICWECRAVMCRITRFRKQACAAQRELTSIADGRTHIQTTSLSRLTTHHKTTYQKVISESNTTPTDNFIDCGLTPDIKSESEEDIPLSELHSNWLSDNETEVAIQTIDCKEELSNSKDTIDYNEDLLFKLKKKRKKIKNGKKSYFSTALLNESELEEIRNNNKMAMNFVDAGFKCDSCIEAFGSQEELDEHNSSLHEEKPDHLQCDICLVYTPITSYHDHREAHYHRHICKFCVYTAYNINDMLSHLRSGHAMKNLVLPGKRKKARHKTAEDLNPGSKPRRKPSMLDKRTPCGYLCTECNKYFDNKNQRWKHVQRHHREGYKCGTCGKRFAFKNNLTRHEQLHQGPPPREECPVCHKMIRTDLVKVHARIHADRERYTCAACAKCFVSRASYEHHLKYTQAHAQTDLHKYKCSLCDKGYRSRGELRDHVNYQHMGKTQHKCPVCGKALATRRCVTRHMRRAHDGVKESAKDKICQQCGKAFRDKKGLREHELIHTGERPLSCEICGCTFRQSASLYTHRKRVHKINTSVKKVTLLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01119731;
- 90% Identity
- iTF_00124660;
- 80% Identity
- -