Aepo000188.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382231.1:7005709-7010476[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0025 0.18 12.7 0.1 3 23 173 193 171 193 0.95 2 11 0.022 1.6 9.7 0.3 2 23 198 219 198 219 0.97 3 11 0.00058 0.041 14.7 6.1 2 23 226 248 226 248 0.97 4 11 0.0042 0.3 12.0 1.3 3 23 258 279 256 279 0.94 5 11 5.3e-05 0.0038 18.0 1.0 1 23 284 306 284 306 0.98 6 11 0.00094 0.067 14.1 1.6 1 23 312 335 312 335 0.96 7 11 7.2 5.1e+02 1.8 2.5 2 14 341 353 340 361 0.80 8 11 0.0013 0.093 13.6 0.1 2 23 366 387 365 387 0.97 9 11 0.00018 0.013 16.3 0.1 1 23 393 415 393 415 0.98 10 11 0.00025 0.018 15.9 0.4 2 23 422 443 421 443 0.98 11 11 2.8e-07 2e-05 25.2 0.5 1 23 449 471 449 471 0.98
Sequence Information
- Coding Sequence
- ATGGAGATGTGTAGAGTATGTTTATCAACAGGAAAACAAATGCTTCCATTGGATGAAACTTTCATTAGCAACTATAACTTATTAACAAATCTTAATATTACCCTAGTAGATGGTATGCCACAGTATTCTTGTCAGAAATGTTTGGACACAGTCAAATGTTTTATACAATTCAGAGAAAAGTCTATAACAGCAGAAACCACATTGAAAGAAATTTATTCTaacattaaagcagaaaatgaaacACTTGTTATAGAGATTGATGATAGCGATTTAAGTGAAAATGATAAGCTGCTGGATATTAAGTCAGAACTTAAGGCAGAAACTTATGATGAAGATATAATTTTAAACAATTTTGATGATGCCTTTTCTGAATATGCAGAGGATAACAACATTATTGTTAAAAAAGAAGAAGATGTGAAACCAAAGAAGATTAAAAGAATTAAACATACGAAGCTCAAAGTAAAAACATCGAAATTATTACAAAGCATTGCTAATGGACTTGAAGATAAGTGGTTCTGTGGTATTTGCCCTAAGTCGTTTGAAGAAATAAATTACCTGAATAGTCATCTAGATAGCCATAAAAGGGACCGAAAGTGTGATCTTTGTAGAGAGCAACTGAACAGCCTCTCTCAGCTCCTTGCACATAGACTGATACATGTCCCATTGAAGCAGAGGAAATGTCACATTTGTGAGAAGAAATTCAAATCTTCTCTTTATCTGGAACATCACTACAGGAATTTCCACATTGAAGAAGATGACAAAACGCTGTTTTGTAAGAACTGTCCAATAACATGCAGCACACCAAGAAAACTTAGCAGTCACATACTGCAAGTACATTCCAGTATTAAGTATATTTGCGACTTGTGTTCCAAAGGTTTCCAAAGCAAAATGAATTTAAAATCGCACGTAAAGTCCCATGGCGAGAATAAAGGTTACGTTTGTGATATCTGTGATTTCTCCTGCAGATATAGTGGTGGGCTAAAAGACCATAAAATAAGAAGACATAATCCAAAGAAGGTTTACTGTAAACAGTGCAAACGACCATTCCAGAGTCAAGTGGCACATGATAAACATAAATGTACATACAAGTTACAAGTGTGCCCTATATGTGGCCTTCAACTCGAAGGAAATTCTAGATTATCCAGGCATATGATGAAACACAGCGACATTCAAAGGTACGAGTGTACTAGGTGTCCCGCTAAGTACAAGACGAAGGGTGCACTGATAGCTCACCTGGACCGACACGACGGCAATCGCACGAAGCAGTGTGAATACTGCCCCGCTAAGTTTTATACCGCCACTGTGCTGATCAAACATCGACGAATACATACAGGTGAAAAACCATATGTATGCAAGGTGTGTAACAAAGGATTTACCGGCAACAACAACCTCAAAGTACATATGAAAGTTCACGGCGAATATTTGATTGTTAAAAAGAATTGTGAACAAGAGAATTTAACTAAATTTAATGTTACCAAGTGA
- Protein Sequence
- MEMCRVCLSTGKQMLPLDETFISNYNLLTNLNITLVDGMPQYSCQKCLDTVKCFIQFREKSITAETTLKEIYSNIKAENETLVIEIDDSDLSENDKLLDIKSELKAETYDEDIILNNFDDAFSEYAEDNNIIVKKEEDVKPKKIKRIKHTKLKVKTSKLLQSIANGLEDKWFCGICPKSFEEINYLNSHLDSHKRDRKCDLCREQLNSLSQLLAHRLIHVPLKQRKCHICEKKFKSSLYLEHHYRNFHIEEDDKTLFCKNCPITCSTPRKLSSHILQVHSSIKYICDLCSKGFQSKMNLKSHVKSHGENKGYVCDICDFSCRYSGGLKDHKIRRHNPKKVYCKQCKRPFQSQVAHDKHKCTYKLQVCPICGLQLEGNSRLSRHMMKHSDIQRYECTRCPAKYKTKGALIAHLDRHDGNRTKQCEYCPAKFYTATVLIKHRRIHTGEKPYVCKVCNKGFTGNNNLKVHMKVHGEYLIVKKNCEQENLTKFNVTK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00667880;
- 90% Identity
- iTF_00758591;
- 80% Identity
- -