Basic Information

Insect: Apamea epomidion
Gene Symbol: -
Assembly: GCA_947507525.1
Location: OX382254.1:6419751-6426742[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00042 0.03 15.2 0.6 1 23 75 97 75 97 0.98

2 15 3.3 2.4e+02 2.9 0.0 2 23 123 145 122 145 0.90

3 15 0.81 58 4.8 0.4 3 23 169 190 167 190 0.93

4 15 0.00019 0.014 16.2 0.6 3 23 198 219 197 219 0.97

5 15 4.9e-06 0.00035 21.3 2.3 1 23 224 247 224 247 0.96

6 15 0.011 0.79 10.7 1.3 1 23 253 276 253 276 0.94

7 15 4.6e-05 0.0033 18.2 1.6 2 23 283 305 282 305 0.95

8 15 0.024 1.7 9.6 1.3 1 23 311 333 311 333 0.93

9 15 0.00035 0.025 15.4 0.9 1 23 411 433 411 433 0.98

10 15 0.9 64 4.7 0.0 2 23 458 480 457 480 0.94

11 15 0.096 6.8 7.7 2.4 3 23 533 554 532 554 0.96

12 15 0.01 0.73 10.8 2.6 1 23 585 608 585 608 0.98

13 15 0.0013 0.089 13.7 0.7 2 23 615 637 614 637 0.95

14 15 0.02 1.4 9.9 1.3 2 23 644 665 644 665 0.97

15 15 3.1e-05 0.0022 18.7 2.2 1 23 671 694 671 694 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00042	0.03	15.2	0.6	1	23	75	97	75	97	0.98
2	15	3.3	2.4e+02	2.9	0.0	2	23	123	145	122	145	0.90
3	15	0.81	58	4.8	0.4	3	23	169	190	167	190	0.93
4	15	0.00019	0.014	16.2	0.6	3	23	198	219	197	219	0.97
5	15	4.9e-06	0.00035	21.3	2.3	1	23	224	247	224	247	0.96
6	15	0.011	0.79	10.7	1.3	1	23	253	276	253	276	0.94
7	15	4.6e-05	0.0033	18.2	1.6	2	23	283	305	282	305	0.95
8	15	0.024	1.7	9.6	1.3	1	23	311	333	311	333	0.93
9	15	0.00035	0.025	15.4	0.9	1	23	411	433	411	433	0.98
10	15	0.9	64	4.7	0.0	2	23	458	480	457	480	0.94
11	15	0.096	6.8	7.7	2.4	3	23	533	554	532	554	0.96
12	15	0.01	0.73	10.8	2.6	1	23	585	608	585	608	0.98
13	15	0.0013	0.089	13.7	0.7	2	23	615	637	614	637	0.95
14	15	0.02	1.4	9.9	1.3	2	23	644	665	644	665	0.97
15	15	3.1e-05	0.0022	18.7	2.2	1	23	671	694	671	694	0.94

Sequence Information

Coding Sequence: ATGAAGTCAAAGATGGCTTCGGGAGAACTCAGGGGTCGCCAGGATACAACTGAAAAGCAGGCCGTCGCCAAAATACCTACCGAAGACTACGATATTGCCATAACACAGTCTACCAGTAAACCAACCCTCACAGCGAAAGACAAAAGAAATATCATGAGAAATAATGTACTACAGGTCCTGATAAAGTCTACCGTCATGCCGTTCCGCTGGCTGAAGAGTTCATACAGGTGTTTTTACTGCTACGAAATTTTTCAAGAGGCCTCCGAATTGAAAATTCATCAGCAAGTACATACGGGGACCGAGGTCAAAGCGCAAGCTATGAAAAATTATTGGGAACCCGTCGTCTATATCGACATATCCAATCTATCATGCAGTCTTTGTCCGGATAAAATTACTGATCTATACGATTTAATCGACCATTTAATCGCGATGCATGGAGTGGAGTATAACAAAGATGTAGGGATTTGTATGGTCGCTTTCAAGCTTGATAATTTTAATGTAAGTTGTCTTGCTTGTGGCGCGAATTTCTACACATTTGGGCCTTTACTCCACCACACAAATAAGGATCACAAAGGAACGTCAGCTATACTTTGTGACATCTGCGGCCAACATTTCAAAGATGCGAACTTACTCCGTCTCCACGTGAAATCTGTTCATGAAAACGCACTATTTTCTTGCACTGAATGCGGTGAAAAATTTGACTCGAAATCTAAACTGAAAACACATCAGAAAAACAGCCACGATATGGAAAAGAAATATAAGTGTGCGGATTGCTCAGAGGTTTTTCAAAGCCACTATAAGAGGTCTAGACATATGGCTGCCGAGCATAAGAATCGGCAAGAAATCAAATGTCCCCATTGTCCGAAGACCTTTGTCTTTAGAAGCATGATGATGACACATTTGCGCGATTCCCATCTTAAATTCCGTAACCATATTTGTGGAGTTTGTGGCTGGAAAGCCTTCAACAGTAATCGGTTGAAAAATCACATGTATAAGCATAGTGGGGAGAAGAATTTCAAATGCATTGCAAGCACTGAGGAAACTCCAAAAACAGAAATAAAGCAAGAACATATCCCTGAAACAAAGCCTTTGCAGAAAGTAACAAATGATTCTAAAGGGAAAACGACAAAACCGTATGGTGTACTAGAGACCCAACATATTTTAAGAGGAAATGTTGCTCGAGTGCTTGAAACATCCACACTGATGCCGTTCAAGTGGCTCAAAAACTCATACAGATGCTTCTACTGCTACGAAATCTTCCAACAGCCTAAAGATTTAAAAGATCACCAAGAAATTCACAAAACAGAAGAAATTGCAAAGAAAATGCAATCGTTTTTAGATCCTGCTGTAAACGTGGATGTTTCGAGAATCTCATGCAGACTATGTCCCGAAAAAATTGATGATTTATATTCATTAGTTGATCATTTGATTATAAAACATGGCATAGTGTTTAATAAAGATATAGGCTTATGCATGAATCCTTTTAAACTCAATAATATCAATGTTTCCTGTGCTATATGCAATAGTATATATCAAACTTTTGGTAGGCTTCTATTCCATACAGATAGGTACCACAAAGGTTCATCTAATGTTCTATGTGATGTTTGTGGCAGTCATTTCCAGACTGCTCATCGGTTAAAGGAACATATAGAAAGTAAACACGACTATAAAAAAGTTAAATGTAGATTATGTGACGATAGAATGGCGCCAACTACTGTACGAACTCACATGCAGAAAGTGCATGGAAAGAAATACAAGTGTTCCAATTGTACAGAAGTTTTTGGATCACATTATAAGCGGTCCTTACATATGATGACGGTGCATAAAAATAGAGAGACAATCAAATGCCTCCAATGTCCGTTGACTTTTGTCTTCAGAAGTACAATGATGAGACACTTAAGAGAGTCACATCTACAAGAAAAGAATGCCACATGCAATATCTGCGGCTGGAAATGCTTTGAAGGGAGCAGACTTCAGATACACATGCTGAAGCATAGCACTGAAAAGAACTTTTACTGCAGTGTGTGCAACAAGGCTTTTAAAACGAAAAAGACGTTGAATCAACATAGTAATAATATTCATATGACTGTTAAGCAGAAGAATGTGCGGCGAACTGTCCCGAAGTAA
Protein Sequence: MKSKMASGELRGRQDTTEKQAVAKIPTEDYDIAITQSTSKPTLTAKDKRNIMRNNVLQVLIKSTVMPFRWLKSSYRCFYCYEIFQEASELKIHQQVHTGTEVKAQAMKNYWEPVVYIDISNLSCSLCPDKITDLYDLIDHLIAMHGVEYNKDVGICMVAFKLDNFNVSCLACGANFYTFGPLLHHTNKDHKGTSAILCDICGQHFKDANLLRLHVKSVHENALFSCTECGEKFDSKSKLKTHQKNSHDMEKKYKCADCSEVFQSHYKRSRHMAAEHKNRQEIKCPHCPKTFVFRSMMMTHLRDSHLKFRNHICGVCGWKAFNSNRLKNHMYKHSGEKNFKCIASTEETPKTEIKQEHIPETKPLQKVTNDSKGKTTKPYGVLETQHILRGNVARVLETSTLMPFKWLKNSYRCFYCYEIFQQPKDLKDHQEIHKTEEIAKKMQSFLDPAVNVDVSRISCRLCPEKIDDLYSLVDHLIIKHGIVFNKDIGLCMNPFKLNNINVSCAICNSIYQTFGRLLFHTDRYHKGSSNVLCDVCGSHFQTAHRLKEHIESKHDYKKVKCRLCDDRMAPTTVRTHMQKVHGKKYKCSNCTEVFGSHYKRSLHMMTVHKNRETIKCLQCPLTFVFRSTMMRHLRESHLQEKNATCNICGWKCFEGSRLQIHMLKHSTEKNFYCSVCNKAFKTKKTLNQHSNNIHMTVKQKNVRRTVPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -