Aepo021953.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382237.1:11463296-11487857[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00062 0.044 14.6 0.2 2 23 144 165 143 165 0.93 2 10 0.00091 0.065 14.1 2.4 1 23 171 193 171 193 0.96 3 10 0.0001 0.0074 17.1 0.3 1 23 284 306 284 306 0.98 4 10 0.00095 0.067 14.1 0.0 3 23 385 406 383 406 0.90 5 10 0.034 2.4 9.2 0.0 1 23 421 443 421 443 0.93 6 10 2.2e-05 0.0016 19.2 0.2 1 23 840 862 840 862 0.98 7 10 0.00097 0.069 14.0 0.2 1 23 868 890 868 890 0.97 8 10 0.00055 0.039 14.8 0.3 1 23 896 918 896 919 0.95 9 10 0.015 1 10.3 1.1 1 23 932 954 932 954 0.96 10 10 0.045 3.2 8.8 0.0 1 20 1110 1129 1110 1132 0.93
Sequence Information
- Coding Sequence
- ATGGATGGAGAAGCTGAAGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCACAGCCCAGGTGTTGTTGAGACAGAGGAAGTGATAACAGGCCTAGATAACGTGCAGCACACTGAATATTCCAACATGACAGCCGAAGAGATGATGAGCACGGACCAAATGGCTGCAGAGAACTTAATGTTTTTATCGCAAGACGTAGTGGGCTATACAGAGACCGCTGAACTGGCAGATGATCCTAGCGTGGAGTGTGTCACCGAAGAGGTCATTACAGACGATTGGGTTATTCCTGGTGGGCAGGAAAGGTACCAAGTTGAAGTTCCTATGGATCATCTGAATAACGCTGATGTGGTTCCGAAAGAGGAAAATGACCTTGATGTTCCTTTACCAACAGATCAAGATGAATACACCGCGATGCGTCCTTGGCCCTGCGACTTTTGCTCGCGGCGGTTCCGTAAGAAGGCGGCTCTCATGAACCATATGGTGGCCCATCAGAACGACCGGCCGCATGCGTGTAATCTGTGCGGCGTGCGATACGTGCGCAAGTGTGACCTCATGAACCATCTCAAGGTTCACGCCTTTGTGCCTGAAAACCCCGATTCTATAGACTATGAAGATGTTTTAGACAATAACCAAATTGTAAAACCAAAGAAGAAACGAGGTCGACGGAAAAAGAATCCAGAGCCGGTCGAGGAGAACGGCATGTGGGAGAACATGACGTCGGCGCGCACGCAGCAGTGGTCGCGGCGCGCGCGCTCGCCGGCGCGCCCCCCGCCCACGCCGCCCTCGCCCCCGCCCGCGCCCCCCGCGCCCTCGCCGCCGCCGCCCAGCGACCCGACGCGCCCCTTCGTCTGCAGGCACTGCGGCGTCGGCTTCGCCAGGGAGAAGGCCTTGCAGTCACATGCCCGGGTACACGGCGGCGACTCGCCAGTGGAGTGCGGCTCGTGCGGCGAGTTGTGCTGGTCGCGCGAGGCGCTGGCCACGCACACGGCCACGCGCCACCCGCACCTGCCGCCGCGCGACCAGCCGCCCGACCCGCCCTACGAAGACTCCGACTCGGGAGACGACATGGAGTTCCGCCTATCCCCGCTGTCACACGGGGCGTCTGACCGCGCGGTGTACGACACGATGCGTGGGCCCGAGCTGTTCTGTCAGGACTGCGGCGTCGCCTTCCAGCGAGCTGACCTGCTGCGGAGACACGTGGCGGCGGCACACAGCTACAAGCGGCACGACAGCTCCAGCAGCACGTGGGCGGAGCACACGTGCGACGTGTGCGGCGAGGGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTAGGTTCGCGGGCGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCGCCGCGCGCGCAGCCCAGGTTAAAAAGAATGGCTAGGGGTCGAAATAATACGTCGTCGTCAAATAATTCACGGCAATTCCCTTGTCGAGTATGTGGCAAAGTGTTTGGTTCGCGGAGCTCGCAACAGATTCACATCCGTATCCACACGGGCGAGCGGCCTTACGCGTGTCGTTTCTGCTGGAAAGCGTTCGCGGACGGCGGCACGCTACGGAAACATGAAAGAATACATACAGGCGAGAAACCGTACGCATGCGCGGTGTGTCCGCGCGCGTTCAACCAGCGCGTGGTTCTACGTGAACATGTGCGCTCGCACCACTCCGCTCCCGACCGGCGCGCTAACGGTGGTCCCGCCTACTGCTGTGTAGTGTGTGGGCGCACGCTGCACTCGAGCGCGGAACTGGTGCAGCACCTCATACAGCACTGTGACGCCAACACGGCGCTCAAGAGACAACCTCAGACGGGGCCACGGAAGTACAAGAGACGACGAAAACTGAAGACGGAGCAATCTCCGGCGACGCCGCGCGACTGGGAACGTACCTCCGCCTCCCCCCCGCCCGCCTCGCGCTCCCCCTCGCCCGCCTCGCGCGCCTCCGACACGCCGCAGCTGTCGCCCGCCTCGCCGCCCTCGCCGCCCTCGCCGCCCTCGCCGCCCTCGCCCGCCTCGCCTGCCTCGCCCGTGCGGCGCCGCCGCCGCCGCGCCGCGTCGCCCGCGCCGCGCCCGCGCATGATCCACACGGAGGAGCCGCGGCCGGCCACGCGCCGGCGCCGCGCCCCCGCGCCCTCGCCGCCGCCCCCGCGCGCCTCCCGGCGCCGGGCGCCGCGCGCGCCGGCCGCGGACCTGCGCGCCACGGTGCCGCCGGAGCCGGCGCCGGACGCGGCGGGGCCCTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGGCGCGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
- Protein Sequence
- MDGEAEDFNLQWEEEVEVKHSPGVVETEEVITGLDNVQHTEYSNMTAEEMMSTDQMAAENLMFLSQDVVGYTETAELADDPSVECVTEEVITDDWVIPGGQERYQVEVPMDHLNNADVVPKEENDLDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAFVPENPDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRARSPARPPPTPPSPPPAPPAPSPPPPSDPTRPFVCRHCGVGFAREKALQSHARVHGGDSPVECGSCGELCWSREALATHTATRHPHLPPRDQPPDPPYEDSDSGDDMEFRLSPLSHGASDRAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSSSSTWAEHTCDVCGEGFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPSCWRTPRATRRARSPGRFAGALQLLAHAEGHAPRAQPRLKRMARGRNNTSSSNNSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKTEQSPATPRDWERTSASPPPASRSPSPASRASDTPQLSPASPPSPPSPPSPPSPASPASPVRRRRRRAASPAPRPRMIHTEEPRPATRRRRAPAPSPPPPRASRRRAPRAPAADLRATVPPEPAPDAAGPYKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -