Basic Information

Insect: Apamea epomidion
Gene Symbol: -
Assembly: GCA_947507525.1
Location: OX382229.1:18844864-18859323[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 8.9 6.3e+02 1.6 0.8 2 19 267 284 266 288 0.72

2 13 0.00068 0.048 14.5 2.4 1 22 293 314 293 317 0.92

3 13 0.00084 0.06 14.2 3.5 2 23 448 470 447 470 0.94

4 13 0.0071 0.51 11.3 0.0 1 23 476 498 476 498 0.95

5 13 0.023 1.6 9.7 0.1 1 23 508 531 508 531 0.89

6 13 2.3e-07 1.6e-05 25.4 3.5 1 23 536 558 536 558 0.98

7 13 0.00033 0.024 15.5 0.9 1 23 564 586 564 586 0.95

8 13 0.00011 0.0079 17.0 4.9 1 23 592 614 592 614 0.98

9 13 1.1e-07 7.9e-06 26.4 0.4 1 23 620 642 620 642 0.98

10 13 0.0031 0.22 12.4 4.1 1 23 648 670 648 670 0.98

11 13 0.00022 0.016 16.0 0.2 1 21 676 696 676 697 0.94

12 13 2.8e-05 0.002 18.8 0.9 1 23 704 726 704 726 0.98

13 13 1.1e-05 0.00077 20.2 4.7 1 23 732 755 732 755 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	8.9	6.3e+02	1.6	0.8	2	19	267	284	266	288	0.72
2	13	0.00068	0.048	14.5	2.4	1	22	293	314	293	317	0.92
3	13	0.00084	0.06	14.2	3.5	2	23	448	470	447	470	0.94
4	13	0.0071	0.51	11.3	0.0	1	23	476	498	476	498	0.95
5	13	0.023	1.6	9.7	0.1	1	23	508	531	508	531	0.89
6	13	2.3e-07	1.6e-05	25.4	3.5	1	23	536	558	536	558	0.98
7	13	0.00033	0.024	15.5	0.9	1	23	564	586	564	586	0.95
8	13	0.00011	0.0079	17.0	4.9	1	23	592	614	592	614	0.98
9	13	1.1e-07	7.9e-06	26.4	0.4	1	23	620	642	620	642	0.98
10	13	0.0031	0.22	12.4	4.1	1	23	648	670	648	670	0.98
11	13	0.00022	0.016	16.0	0.2	1	21	676	696	676	697	0.94
12	13	2.8e-05	0.002	18.8	0.9	1	23	704	726	704	726	0.98
13	13	1.1e-05	0.00077	20.2	4.7	1	23	732	755	732	755	0.96

Sequence Information

Coding Sequence: ATGGAAGTAGTTCTTTACAATTCTAATGTTTGTCGACTATGTGGGGAAGAAAATGATAATGGAAATTTATTATATTCGTGTGAAGAAAATAGTCAAAACTTAAGTGAAGTGATTAACACATATTTGCCAATCAAGGTAGCTGATGATGGGCAACTGCCTCGGACCATCTGTCCAGGATGCACCATACAACTGGAAGCCACCGTAGAATTCCTAACACTGATTATAAACGGACAAAAAGTAATTCGTGAACTTCATCTCAGAGAGAAAGAATACAAGAGAACTGTATTCAATCCCCCTGCGGAACAGGAAATTGTAACGGATAAGATAATATATGAAGTTAATACCAGCGATGGAGTGTACCAGGTGGAACATCCGATTTCCTTACAAGTGGCTGGTCTCGAAAAGCCAAAACGCAAGCGCGGCAGACCTCCTAAAAAGCCCAAGACTCCTGAGGAGTTAGCCAAGGAAGCTGCTGCGAAGGAGCAGGCTGCTGTAAAGCATCCTCAAAAGCAAGAAAGAGAAGATGAGCCAACTGGAAAACGGAGGAGGAAAACTCCAACTAGGTTTAGAGAAGCCGTTCAGGGTAAAGAGCTTGAGAGGATATTCAAAGAGGAAGGAGTAACTGACGGAGATGAGAGTGAGCCTGATGTGAAGATAGAACAGCACCTTGACTTGAAGCCACCAGTACCTAAAGAACCAGAAGTTATCGGTCATCTTGAGGATTCTGGTGAACTCGTTGTTGTGGTCAAGGGCAAAGGCCGTGGAAGGCCTAAAGGTCCAATGACACAGACCCGCAAAGAATGCGCAATATGCGGCATGGAGTTCACCTGCACTGGTCGATACATGTCGCACGTGGCCCAACATGGGCCAGTGCTGTACCAGTGTGGGCAGTGCTCCGAGACCTTCACCACACGGTTACACTTTAACAACCATCAGAAGGAACTTGGACACACTGGACAAAATATTATACCATGCAAGAAGAATGTTGAGAGAATTAGGGCTAAGAAAACTGACAGACCAAGAACTGAAACAATAGTGATACAAGATGACCCTCAACCACAAACAACGAAGTCTGACACTGTACAAATATTAGAAAATGTGATAATACCTCATACTATAGCAACCTCCTTGCCAGATTTAAATCCTCAGCCAATAGTTATTGAGAATGCAGTGAATGGGTCAGAGTTTCTGATGGCTGCCGGCCCTGCCGTTGAGATTACCTCTAGTCCTAGTGTTGATAGTGATGTTAAAATTGTTGATTCGACCACAGACGCCACAGCGACAGAGAAGTCTGATGATGTAGAACAAGTAGAAACGACGCCGTCCGGTAAACCAAGACTGAAGTGTAACCACTGTGACAAGACATTCAGTAGCAAACAGAGCAAATCATTACATATCAAGGCATCGCATCAAGGCGAGCGTCCATACGTATGCGGTGAATGCGGCTCGCGGTTCGCTTACCCGCGCTCGCTCGCCTTACATGCTGTCTCGCATCGACGACGCGCTGGCAATTCTAAGGGATATGCCTGTGATCTGTGTGGGAAGGTCCTCAACCACCCATCGTCGGTAGTATACCACAAAGAAGCGGAGCACGCGGGCCAGCGATACGTGTGCAACAAATGCGGCAAGTCGTTCAAACACAAACAGTTGCTGCAACGACACCAGCTCGTGCACTCACAGGACAGACCTTATAATTGTAAGTTATGCAGCGCATCATTCAAGACGAAAGCGAACCTGCTGAATCACTCGCTGCTCCACACCGGCGTCAAGAAGTTCTCGTGTGAGATATGCAAACACAAGTTCGCGCACAAGACTAGTCTCACGCTGCATATGAGGTGGCATACTGGTCAAAAGCCCTACTCCTGCAACGTTTGTGGCAAGAGCTTCAGTCAGAAAGGCAACCTCTCCGAACATGAGCGCATCCACACCGGAGAGAAGCCCTTCCAGTGTTCTCTGTGTCCGCGCAAGTTTACCACCTCCAGCCAACATCGGTTGCACGCGCGGCGGCACAACTCTGATAGACCGTTCACTTGCGCGCATTGTGGGAAGAGGTTCGTGTCGCGCGGCTCGTGGGCGGCGCACGCGCGGCGCGAGGGCGGCGGGCGCGCGCACCGCTGCGGCGACTGCGGCCGCACCTTCGCGGAGCGCTGGCCGCTCATGAAGCACCTGCGCAAGCACTCGGGCGAGCGGCCCTTCCGCTGCCCGCACTGCTCCAAGGCCTTCGCCGACTGCTCCAACCTTAATAAGCACAAGAAGCAAGTCCACAAACAGATCAGCTTACTGGCGACCGCGAACCAACCGCCGCCGGCTCATACACCCATTCCTCTCAAGATAGAAGAACCAGACTCCCCTCTCATACAGTTGGAGGAACAGACTGTTTCCCTCCCGGAGACATCTCCCGTCAAGTTACTGGAGGAAGCCACGGAAGATGAGTTGGAAGAGAGAGTTATATACGTGACATATGATGTGGATGATGCTGAATCTCCTGCCTTCCATATATTGGACCCTGAACAGGCAGCAACTCTAGAAGACAGTAAGGTGCTAACAACATGCGAGCTCTACTCGGGCCCCTCCCTCCTGGTCCCACAGCCCGAATACGAGCAACTAGAGCTGCAACACGAGCCATTGGAGCTGGAACAAGAGCAGCTCGAGCAGGAAGAACTTGAGCAGCTGCCTGAAGAGCTTGTGTTGGAAGGACATGATCAAAATATCCCTGTAACAGATGAGCAGGGTAATCCGTTACACTTCACCATGCAGGATGGCACACGACTCGCCATCACTTCAGCCGACGGAAAGTCTTTGCAAGTGATAACACATGATGGTCAAACTATACCTGTTGAGATTAACGGATACGCAGATGAGGAGGAGGTTGACAATCCCGACACAATAGTTCACCAGCTGAACCTACAGAAGAGCATCGACTCCAACGTTTCGTCGCCCGTTACACATTACTTTACTATTGTTTAG
Protein Sequence: MEVVLYNSNVCRLCGEENDNGNLLYSCEENSQNLSEVINTYLPIKVADDGQLPRTICPGCTIQLEATVEFLTLIINGQKVIRELHLREKEYKRTVFNPPAEQEIVTDKIIYEVNTSDGVYQVEHPISLQVAGLEKPKRKRGRPPKKPKTPEELAKEAAAKEQAAVKHPQKQEREDEPTGKRRRKTPTRFREAVQGKELERIFKEEGVTDGDESEPDVKIEQHLDLKPPVPKEPEVIGHLEDSGELVVVVKGKGRGRPKGPMTQTRKECAICGMEFTCTGRYMSHVAQHGPVLYQCGQCSETFTTRLHFNNHQKELGHTGQNIIPCKKNVERIRAKKTDRPRTETIVIQDDPQPQTTKSDTVQILENVIIPHTIATSLPDLNPQPIVIENAVNGSEFLMAAGPAVEITSSPSVDSDVKIVDSTTDATATEKSDDVEQVETTPSGKPRLKCNHCDKTFSSKQSKSLHIKASHQGERPYVCGECGSRFAYPRSLALHAVSHRRRAGNSKGYACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQDRPYNCKLCSASFKTKANLLNHSLLHTGVKKFSCEICKHKFAHKTSLTLHMRWHTGQKPYSCNVCGKSFSQKGNLSEHERIHTGEKPFQCSLCPRKFTTSSQHRLHARRHNSDRPFTCAHCGKRFVSRGSWAAHARREGGGRAHRCGDCGRTFAERWPLMKHLRKHSGERPFRCPHCSKAFADCSNLNKHKKQVHKQISLLATANQPPPAHTPIPLKIEEPDSPLIQLEEQTVSLPETSPVKLLEEATEDELEERVIYVTYDVDDAESPAFHILDPEQAATLEDSKVLTTCELYSGPSLLVPQPEYEQLELQHEPLELEQEQLEQEELEQLPEELVLEGHDQNIPVTDEQGNPLHFTMQDGTRLAITSADGKSLQVITHDGQTIPVEINGYADEEEVDNPDTIVHQLNLQKSIDSNVSSPVTHYFTIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00746034;
90% Identity: iTF_00449497;
80% Identity: -