Aepo022563.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382254.1:5896537-5903181[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.22 16 6.6 0.0 3 23 101 122 99 122 0.94 2 23 0.0093 0.66 10.9 3.8 1 23 144 166 144 166 0.96 3 23 0.00019 0.014 16.2 0.6 1 23 170 192 170 192 0.98 4 23 0.012 0.88 10.5 0.3 1 23 197 220 197 220 0.92 5 23 0.0001 0.0075 17.1 2.1 1 23 226 249 226 249 0.98 6 23 0.00088 0.063 14.1 1.0 1 23 315 337 315 337 0.93 7 23 0.13 9.2 7.3 1.4 1 23 410 432 410 432 0.97 8 23 0.0019 0.13 13.1 0.2 1 23 436 458 436 458 0.95 9 23 0.0085 0.61 11.1 0.3 1 23 463 486 463 486 0.95 10 23 0.015 1.1 10.3 3.5 1 23 492 515 492 515 0.96 11 23 0.11 7.6 7.6 0.4 1 11 522 532 522 536 0.90 12 23 0.21 15 6.7 2.1 1 23 651 674 651 674 0.94 13 23 0.27 19 6.3 0.1 2 23 699 721 698 721 0.94 14 23 0.17 12 7.0 0.1 1 23 745 767 745 767 0.93 15 23 0.00016 0.011 16.5 0.2 1 23 771 793 771 793 0.98 16 23 0.00016 0.012 16.5 0.5 1 23 798 821 798 821 0.96 17 23 0.0057 0.41 11.6 0.3 2 23 828 850 828 850 0.93 18 23 0.11 7.9 7.5 6.5 1 23 857 880 857 880 0.96 19 23 0.00065 0.046 14.6 5.3 2 23 887 908 886 908 0.96 20 23 0.00022 0.016 16.0 1.7 1 23 914 936 914 936 0.98 21 23 0.13 9 7.4 0.1 1 23 1083 1106 1083 1106 0.94 22 23 0.016 1.1 10.2 0.2 2 23 1132 1153 1131 1153 0.96 23 23 0.029 2 9.4 0.1 1 16 1175 1190 1175 1192 0.89
Sequence Information
- Coding Sequence
- ATGATAAAGCTGGAAGTGGAATCTGATACTGAAAATAACAGAGCCCCAATAATCTCTACAGCACGAGAGGGCTACCAGAGACGGGCTATCTTCAGAAATAATATTGCCATCATCATGGAATCGTGCACCGCTTACCCTTTCAAGTATAGAAAAGGAACATACCTGTGTTTCTTCTGTAAAAACACTTTCCTAGAACCAGAGAAGTTGAGAGAACACAACCAACTCCAACACTCCGAAGTAAAAACTTTACTAAAACCCCGAAAGTATGAACCCCTAAAAATGGACTTCGCAACTACCATTTGCAAAATGTGCGGCACGGAAATTGGTGATTATGCTGAACTCAAAATCCACCTGACTGTCGAACATGGCAAGATTATAGACTGCACTTACGGAGACAGCGTGCTTCCATACAAGCTGAGCAAAGAAGAACACAGCTGTCAGATCTGTGGGAAAACATACGAAATGTTTCTGAGCCTACACAAGCATATGAATGATCATTACGAACATTTTATTTGTGAAACTTGTGGGAAGAGATTCGCGACTTCTCAGCGAATGGTGAACCATGCTAGGACTCATGAAAGAGGAGACTTCCCTTGCAAACGATGTACAGAAACATTCCCTTCTTACGCTTCGTTATACGCTCATAACGCTAAAATCCATAGGTCTAATAAGAGATACAAGTGTCCTATATGCGACGAGAAATTCGCTTCTTACAAGCATAGACTAAAACATTTAAATACCATACACGGAGAGAAGACTGCTGTCTTTCCTTGTGACGAACTATCTGACGAAGAATTCCATATAGAAAATAGAGCTGAAATCAAGGCACGGATCGCAGAAAAAAAGAAAAAGTTTACCGATGGCATTAAAGCTAGGATAAGGCACGCTATCATACTGCTGGAATCATCGAAAATATGCCCCTTCAAGTGGATGAAAAATCTATATATTTGCTTCTATTGCCATGAACAGTTCTCAGACCCTGCAACATTAAGAAACCATAACATAGAACACGGTTTGCTGACGACATCGCAAGTCAAATACGCTTTGTCGAAACTGAAGAAGTACGAATTAGTGAAAGTAGATATAACCGATGTCGGTTGCAAGCTCTGCGATGACCTGATCCCAGATTTTCCCTCCCTAAAATGGCATCTTCTAGAAAAGCATAAGAAGAATTTAGATCCGAAAGCTGGCGATGGTGTCCTTCCGTTCAAAGTTACAATCAACGAATTCCCATGCGCGCTTTGTATGGAAAAATACACAGAGTTCAAGTCTCTTAACCACCATATGAACGTTCATTTCCAAAATTTCATTTGCGAGCAATGTGGCACTGGTTTTATTACTCCAGAACGTTTGAGGACTCACGCGTTCTCACACGAAACGGGATCGTTTCCCTGCGACAGTTGCGACAAAGTATTCAGGTCTACTAACGCTAAAAACGAGCATTACGCTACCGTACATATGAAAGTAAAACGCCATAGATGTCCACATTGTGCTGAAGCATTTAGAAACTACTTTCAGCGCAATAAACATATTTCCAGCGTCCACGGTATGAAGTTAAAAGAATTCAAGTGCACTATGTGTCCTAAAGTTTTCACTATCAGTGGATCGGACTCCGAAATACCTGATACGAAGCGAAGAATTATCCCGTTATTCCAAGTGTCTTACGACAGAAGCTTGTGTAGACCTCTCGGGACATTAATAGACTTCAATAGATTCCGACAAAAGAGTATTAAAGCCTTCTCTTCACCAGCAACAAGAGATTTCTCTCCATCTCGCAGTCCATCACCCGTTTACTTAAGAACTGAACCGTCGCCTTTGGTCAATAGAACGCCGACATTATCCATCCAAACTGTAAAACCCAAGGTGAAGAAAACTCCTGATATTAGGCAGAATGCGTTAGCTGTGTTTGAATTTTCTACGGTCTACCCATTCGTTTATGGCAGCAACAAGTTCAAATGTTTCATCTGCTCGCAACCGTTTCTGGACCTTAATGAATTGAAGCTGCACATGCATTTCTCCCATGCCTTCGCACCTCTTAAGAGACTTGTTAATAATCGAAGAGAGAATGTCTTAAAAGTAGATGTAAGTGATATAACCTGCAAGATATGTTCAGAAAAACCTCCCAATCTGGTCGAACTCAAGCGCCATCTTAAAGAAGTACACGAAAAACCAATGGATTTAGAAATCAAAGACAATATGATCCCGTTCAATCTTGAACTCGTAGACGAAGCCTACAAATGCGTTATATGCGAACAAAGTTTCATAAAAGTGCGAATTTTAGTTATACATATGAGTGAACACTTTAATAATTACAGCTGCGAGATATGCGGATCAGTCTTCATGACTTTACGGCTCTTGAAGAAACATTTAGAAGTCCATGATTCTGGAAACTTTCCTTGCGATCGATGCAATAAAGTTTTCAGCACTCCTTATAAACGGACTTTGCATATACGAGGCGTGCACTTGAAGCAGTGTCCTAGAAGATGCCCAATATGTCCAGAAAAGTTTAATTCGAACTATAAAAGGACTATACACTTACAAGATGTCCATAATCAGGAGACTAGAGTGCATAAATGCAAGACGTGCGGCCGAGGATTTAATCTGAAGTATCATTTGGTCTGTCACGTGCGGTCTGTCCATCTCCAGGAGCGAAATCAGCAGTGCGATGTGTGTCACCAAAGGTTTTGCAACAAGGAGTCTTTAAAGCGACACAGAGTTATACATACAGGGGAGAAGAATCATAAATGTGATGTTTGTGGGATGGCGTTCTTGAGGAGAAAGAATTTGAAGGACCATTTGCGTTTGCATGATATTAGTATCATCCAGAAATCAAATTCTACGATCACTCTGAAAGACGAAGACGGAACAGAAATTAAACTCACAGTACTCAAACATCCAATTTCTTTACAAACTCTAGAATATGAAACTCAAGATATTACCGGAAATCACAACTTTAAGAATAAACGAAAAAAGAGAATTGACAAATTGAAAGAGGTTCAGAAAAGCAACATCAATTTAGAAAACATATCTTTGTTGAAAGAACCAGTATCTATAAATAATGTTGATTGGAAAAAACACAATGAGCAAGAAAATTCGGTGACATTTAATGTGAAAACTGTACAAGGATTTGTTCGTGCACCAACGAGACAACGAAGTAAAAACGTTGACTACGAGACTTGGAAACAGAATGCTTTAATCATCTTTGAAAATTCTTATGTCTATCCATTTATACATGCGGGTAATAAATACAAATGCGTCATTTGCGCCAAACCCTTTCTAGACGCTAATCTGTTGAAAGACCATACTATAAACGAACATAATGCTAAAGAAATGAAAAGAGCATTAAATAACAGAGTTAGAGACAAAAATCTTAAAGTCGATGTCACGTATCTGCAGTGCAAGATCTGTTTGCAATCACTACCTGATCTTCAGAACTTGAAAATGCATTTGCAGGAGCATGGCAAGAAAATACAGCCAGATTTGCAAGATAATATTATACCTTACAAGCTAGGAGGCGAGAATTTCGAATGTCAAGTGTGTGGGGAGAAATTCACGAATCGGGCAGCTTTCCTTGCAGCAAATGCGACAAAGTGTTTACTAACTCTACAAAAAGGTCACTACACTACAAAGGAGTGCATCTGA
- Protein Sequence
- MIKLEVESDTENNRAPIISTAREGYQRRAIFRNNIAIIMESCTAYPFKYRKGTYLCFFCKNTFLEPEKLREHNQLQHSEVKTLLKPRKYEPLKMDFATTICKMCGTEIGDYAELKIHLTVEHGKIIDCTYGDSVLPYKLSKEEHSCQICGKTYEMFLSLHKHMNDHYEHFICETCGKRFATSQRMVNHARTHERGDFPCKRCTETFPSYASLYAHNAKIHRSNKRYKCPICDEKFASYKHRLKHLNTIHGEKTAVFPCDELSDEEFHIENRAEIKARIAEKKKKFTDGIKARIRHAIILLESSKICPFKWMKNLYICFYCHEQFSDPATLRNHNIEHGLLTTSQVKYALSKLKKYELVKVDITDVGCKLCDDLIPDFPSLKWHLLEKHKKNLDPKAGDGVLPFKVTINEFPCALCMEKYTEFKSLNHHMNVHFQNFICEQCGTGFITPERLRTHAFSHETGSFPCDSCDKVFRSTNAKNEHYATVHMKVKRHRCPHCAEAFRNYFQRNKHISSVHGMKLKEFKCTMCPKVFTISGSDSEIPDTKRRIIPLFQVSYDRSLCRPLGTLIDFNRFRQKSIKAFSSPATRDFSPSRSPSPVYLRTEPSPLVNRTPTLSIQTVKPKVKKTPDIRQNALAVFEFSTVYPFVYGSNKFKCFICSQPFLDLNELKLHMHFSHAFAPLKRLVNNRRENVLKVDVSDITCKICSEKPPNLVELKRHLKEVHEKPMDLEIKDNMIPFNLELVDEAYKCVICEQSFIKVRILVIHMSEHFNNYSCEICGSVFMTLRLLKKHLEVHDSGNFPCDRCNKVFSTPYKRTLHIRGVHLKQCPRRCPICPEKFNSNYKRTIHLQDVHNQETRVHKCKTCGRGFNLKYHLVCHVRSVHLQERNQQCDVCHQRFCNKESLKRHRVIHTGEKNHKCDVCGMAFLRRKNLKDHLRLHDISIIQKSNSTITLKDEDGTEIKLTVLKHPISLQTLEYETQDITGNHNFKNKRKKRIDKLKEVQKSNINLENISLLKEPVSINNVDWKKHNEQENSVTFNVKTVQGFVRAPTRQRSKNVDYETWKQNALIIFENSYVYPFIHAGNKYKCVICAKPFLDANLLKDHTINEHNAKEMKRALNNRVRDKNLKVDVTYLQCKICLQSLPDLQNLKMHLQEHGKKIQPDLQDNIIPYKLGGENFECQVCGEKFTNRAAFLAANATKCLLTLQKGHYTTKECI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -