Aepo009847.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- TIGD6
- Assembly
- GCA_947507525.1
- Location
- OX382248.1:14680497-14681465[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3.8e-07 0.00017 21.6 0.0 10 39 22 51 17 55 0.87 2 2 8.5 3.7e+03 -1.9 0.0 29 36 290 297 290 300 0.84
Sequence Information
- Coding Sequence
- ATGCCAAGGAACTGGACAAGGAAGACGTCTAAAGCGAGCTGGACTGCAGGTGACCTGCAGGCAGCTGCTGTACGTATAAGAGGTGTGTCAATACGCAAAGTTGCCGAGGAAACCGGCATACCTTTCAGCACGTTACAAAGAAGGATAAAGAAAGATGAGTTCAAACCTCCAAAACTAGGAAGGCATACGGTTTTTAATGAAGACCAAGAAAATATACTTACAGAGCGTATTTTACAATTAAGTAACATGTTTCATGGTTTGACGACAAATCAACTAAGAAAAATAACATTTCAATGTGCTGAAAATTTAAAACTATCTCATAATTTCAACAGAGAGACTAGAATGGCTGGTAGAGACTGGATTCAAGGATTTCTTAAAAGAAATCCACGGATAAGCATTAGAAAACCTGAAGCCATAAGCATACAGAGAATTACAGGTTGTAATAAAACCGATATGCATATTTTTTTTAAGAACTTGGAAGAAGTCATGACAAAAATTTCGTTCTCTCCTCAAGACATTTACAACATTGATGAGACAGGTATTACCACCGTTCAGGAAACCGAAAAAATCCTGGCTACAAAAGGTCAAAAAAGAGTGGGTTCTTTGACTTCTTGGGAGAGAGGCAAAACAATTACGGTCATTTGTTGTATGAGTGCTGTTGGAAGTTTTATTCCTCCTATGTTTATCTACCCACGCAAAAGACATTCACCACAACTTGAGAAAGATGGACCATTAAGTGCGGCATATGAAAATTCTAATAATGGTTGGACGAATGAAGAACTATTCATGAAATGGTTACAACATTTCGTGAAAACCGCTAAACCGAGAAAGGAGAAACCAGTTTTATTAATCTTAGACAACCATTACAGTCATTCTACCCTCGAATCATACAATTTCTGCAGAGAAAATTTCATTACTGTGGTGTCCATTCCTCCTCATACATCACATATGCTGCATGCAGCCTCTTGA
- Protein Sequence
- MPRNWTRKTSKASWTAGDLQAAAVRIRGVSIRKVAEETGIPFSTLQRRIKKDEFKPPKLGRHTVFNEDQENILTERILQLSNMFHGLTTNQLRKITFQCAENLKLSHNFNRETRMAGRDWIQGFLKRNPRISIRKPEAISIQRITGCNKTDMHIFFKNLEEVMTKISFSPQDIYNIDETGITTVQETEKILATKGQKRVGSLTSWERGKTITVICCMSAVGSFIPPMFIYPRKRHSPQLEKDGPLSAAYENSNNGWTNEELFMKWLQHFVKTAKPRKEKPVLLILDNHYSHSTLESYNFCRENFITVVSIPPHTSHMLHAAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -