Basic Information

Insect: Apamea crenata
Gene Symbol: -
Assembly: GCA_949629185.1
Location: OX451381.1:4796919-4801315[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 5.6 5.1e+02 2.5 1.5 2 23 255 276 254 276 0.83

2 10 0.38 35 6.1 0.2 3 23 300 321 298 321 0.95

3 10 0.0093 0.85 11.2 0.5 2 23 344 365 343 365 0.95

4 10 4.3 3.9e+02 2.8 3.2 1 23 369 391 369 391 0.94

5 10 0.0021 0.19 13.2 1.0 1 23 400 423 400 423 0.85

6 10 0.011 1 10.9 2.0 1 23 429 452 429 452 0.94

7 10 3.8e-05 0.0035 18.7 0.7 1 23 458 481 458 481 0.95

8 10 3.2e-05 0.0029 19.0 1.5 1 23 487 509 487 509 0.97

9 10 6.4e-06 0.00059 21.1 0.9 1 23 515 537 515 537 0.98

10 10 0.00017 0.015 16.7 2.0 1 23 543 566 543 566 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	5.6	5.1e+02	2.5	1.5	2	23	255	276	254	276	0.83
2	10	0.38	35	6.1	0.2	3	23	300	321	298	321	0.95
3	10	0.0093	0.85	11.2	0.5	2	23	344	365	343	365	0.95
4	10	4.3	3.9e+02	2.8	3.2	1	23	369	391	369	391	0.94
5	10	0.0021	0.19	13.2	1.0	1	23	400	423	400	423	0.85
6	10	0.011	1	10.9	2.0	1	23	429	452	429	452	0.94
7	10	3.8e-05	0.0035	18.7	0.7	1	23	458	481	458	481	0.95
8	10	3.2e-05	0.0029	19.0	1.5	1	23	487	509	487	509	0.97
9	10	6.4e-06	0.00059	21.1	0.9	1	23	515	537	515	537	0.98
10	10	0.00017	0.015	16.7	2.0	1	23	543	566	543	566	0.98

Sequence Information

Coding Sequence: ATGAGCGCGAATAACCGCAAGGGTCCCATCGTGGACTCTGGTACGTGCAGATGCTGCGGTGCAGTCAAGAAGTGTCGATTATTGAATGTGGAGTACGAATGGACGGGTCAACGCGAAGTTTATGCCGATATGTTTGTCGACTGTTTTGGACTAGTGCTCTCTAATTTGGAAGGCGACGAGTCTGAGCGCCTGATCTGCGCGACGTGCGTGGTACGTCTGAGAGATGCGCGCGCTTTCCGACAACAAGTGCTGGTCTGCGAAGAGAAACTTCTCAGCGCTACGGTGCATATACATGATGATAACGAAAACAGTTACGAAATGGAAGTAGTAGTAAAACAAGAAGTGGACGGCGTACCATTCAAAGAAATAAACGATTCTGACAATGACGGTGATGATCATGATACTGACCCCATCGAAGACACCATGGAACAGAATGAGCCTGGGTCGGGCAAAGAGAATGTCACTGCTACATTGTCTATACAAGTAAAAGTAGAAGAGATACAAGAGAACCCAGTTGAGGAGTTGTCGCCGCGGCCCGAGGGCGCCACCGTCGACCCGGCCCAGACGGACATGTTGGACCAACTCAAGAGCATGAAGAGGAAACTTGACCAGATGCGACATACTGATGAACCCCGCCGATCCGAATCCCCTCTGTACAGACGCCCAGTGACAGTCGACAAAGACCTCCACATACTCAGGAATGCAGTGAAAATCGTCGAAAACTCTTATGTCTGTCCGTTCATCACAGTCTTTAGCGATTACCATTGTATATACTGCCGAGATATGTTCCTAGACCCGACCCAGTTACGAGAACACACGATGACTCACGACCCAAAGAAGTATAAAGATGTCCTGGATAACAAGAAATTAATTCAAGTCGATATCGATAGAATTGACTGTAGACTATGTGACGAAAAAATCGATAGTGTCGATACTTTCAAACAGCACATCACTACGGAACACGGAATAAAGTTATTCAAAGATGTACAGAATGAGTTCATGCCTTTCAAACTCAAAATTGGAACGTTAACTTGTGTTGAATGTGGGAAGAATGTAGGATTTTTTCACGCGCTAAAAAAACATATGGCCGAACACTTTGGTACCTTTATTTGTGACGTATGCGGCGCTCATTATTTTGAAGAACGGCATTTGACTTTCCATAAAAACTCGCACAATACTAATAAAGATGTACAAATGTTTCCCTGCGATGAATGTGACAAGACTTTCCGTTCGAAAAACAGTAGAACTTTTCATATTGCGCGGATACACAAAAACGAGCCTGCTTACCCTTGCAACAAATGCGACGAGGTATTTATTTCCTACCATATGAGATACCGACACAAAATGAATGTCCACGGCGAAAAGCGAAAGTTCCCTTGCGACGGCTGCGACAAAGTCTTCGACAGTCGAAAAACTCTTCGAGAACACAACCAAAGAACACACTTACAATTATTCCGACACGAATGCACACTTTGCGACAAAAAATTCTATCTACCCTCCGCTTTAAAAGACCATATGACGTCACACACAGGAGAACGGAACTTCAGATGTGAATTTTGTGGGAAAAATTACCCTAGGTCTAAGGCGTTAAAGGTGCATTTGCAATCTCATAGTGCGGAGAAGAGGTATAAATGTACGCTTTGTCCCTCTGCGTATACGCAAGTGACGAATTTTAAGAATCATATGAAGACTAAACACCCTTTGGGGGTGGAGGGGAGAGAAGGGGGGGAGGGGTATCGttga
Protein Sequence: MSANNRKGPIVDSGTCRCCGAVKKCRLLNVEYEWTGQREVYADMFVDCFGLVLSNLEGDESERLICATCVVRLRDARAFRQQVLVCEEKLLSATVHIHDDNENSYEMEVVVKQEVDGVPFKEINDSDNDGDDHDTDPIEDTMEQNEPGSGKENVTATLSIQVKVEEIQENPVEELSPRPEGATVDPAQTDMLDQLKSMKRKLDQMRHTDEPRRSESPLYRRPVTVDKDLHILRNAVKIVENSYVCPFITVFSDYHCIYCRDMFLDPTQLREHTMTHDPKKYKDVLDNKKLIQVDIDRIDCRLCDEKIDSVDTFKQHITTEHGIKLFKDVQNEFMPFKLKIGTLTCVECGKNVGFFHALKKHMAEHFGTFICDVCGAHYFEERHLTFHKNSHNTNKDVQMFPCDECDKTFRSKNSRTFHIARIHKNEPAYPCNKCDEVFISYHMRYRHKMNVHGEKRKFPCDGCDKVFDSRKTLREHNQRTHLQLFRHECTLCDKKFYLPSALKDHMTSHTGERNFRCEFCGKNYPRSKALKVHLQSHSAEKRYKCTLCPSAYTQVTNFKNHMKTKHPLGVEGREGGEGYR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00039266;
90% Identity: iTF_00758626;
80% Identity: -