Basic Information

Insect: Apamea crenata
Gene Symbol: -
Assembly: GCA_949629185.1
Location: OX451377.1:10863728-10873882[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 8 7.3e+02 2.0 2.7 1 23 266 289 266 289 0.91

2 10 0.02 1.9 10.1 3.5 1 23 310 332 310 332 0.98

3 10 0.19 17 7.1 0.1 2 23 343 364 342 364 0.95

4 10 0.051 4.6 8.9 0.1 2 23 370 392 369 392 0.96

5 10 9.3e-06 0.00084 20.6 1.0 1 23 398 420 398 420 0.98

6 10 0.00092 0.083 14.4 0.1 1 23 426 449 426 449 0.95

7 10 0.0039 0.35 12.4 4.5 1 23 458 480 458 480 0.99

8 10 0.0008 0.073 14.5 2.3 3 23 490 510 488 510 0.97

9 10 4.1e-05 0.0037 18.6 4.1 1 23 516 538 516 538 0.98

10 10 1.6e-05 0.0015 19.9 2.5 1 21 544 564 544 565 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	8	7.3e+02	2.0	2.7	1	23	266	289	266	289	0.91
2	10	0.02	1.9	10.1	3.5	1	23	310	332	310	332	0.98
3	10	0.19	17	7.1	0.1	2	23	343	364	342	364	0.95
4	10	0.051	4.6	8.9	0.1	2	23	370	392	369	392	0.96
5	10	9.3e-06	0.00084	20.6	1.0	1	23	398	420	398	420	0.98
6	10	0.00092	0.083	14.4	0.1	1	23	426	449	426	449	0.95
7	10	0.0039	0.35	12.4	4.5	1	23	458	480	458	480	0.99
8	10	0.0008	0.073	14.5	2.3	3	23	490	510	488	510	0.97
9	10	4.1e-05	0.0037	18.6	4.1	1	23	516	538	516	538	0.98
10	10	1.6e-05	0.0015	19.9	2.5	1	21	544	564	544	565	0.95

Sequence Information

Coding Sequence: atgGAGAACATATGCAGATTTTGTTTGAAAGTATCTATTAAAAACATGTGCAGTTTACAAGAATGCGACATACTCTATAGCATTCAAAAATTTCTAACGATAGAAATACCAGCTGAAGATTCCTTCCCGAGCAATTTATGCAAGGAATGCTTTAAAGAAATATCccaaattattaaattctgtatAACTCTCAAAGACAATGAAgacaaattacaatattattcaatAAATGGCCTATTAGAAGATTATTATTCAGAAATTACAAATAACCAGCAGattaaacacaaacaaaaagagttaaaaaaagaaacaccaTATTTTGAGAAAGTTGAAAATAAGACAAATACAAATTTCGGGGATtatgatcatttaaaaaatgacGAATTCTCCGATGATATTAATGACAGCCATTGCAGTTCTGACCGTTAtattctgaaagttgaaaacaatacaaatacaaattccGGGGATtatgatcatttaaaaaatgaagAATTCTCCGATGATATAAATGACAGCCATTGCAGTTCTGACCGTTAtattctgaaagttgaaaacaatacaaatacaaattccGGGGATtatgatcatttaaaaaatgaagAATTGTCTGATCATATTAATGACAGCCTTTGCAGTTCTGACGATGAAATAACACTGTCCTCAATCAAGAAAGAAAATGAACTTAATTCCACTGctccattaaaaaatataacaaaatttATACCTATAAAGAGTCTCATTcctaaaaggaaaaagaaaaaagaaccaGAAAACCCTGAATACGTAAAACCATTCACTTGTCTGACATGTTTAATAGAATGTCATTCTCAAGCAGACCTCTCTAACCATTACTATGCCAACCACgtcatgaaaaaaaatgaagataaatattatacagAACATAAATCGGAGGACAAGACTACGTACAGCTGTAACAGTTGTGTGAAAACATGTAAATCGAAGAAAGATATTGTAAAACATATTACAAGTCATACTGATGACGAAAAAGATGAGAGACCCTTGATTTGTAAACTTTGTGCCAGAACATACCGGAGAGTTCCCGATATAGTTCGCCACGCTAGAGCCCACAACGGCATTAAACTGCAGTGCCCATACAACTGTGGGTACACCACCGCTTACGCAGGCGCTATGAAAGAACATAAGAGTAGACACTTGGATGAGTATAAGTATACTTGTGAGACATGCGGCAAGGGCTTCAACACAAAGACCTGGTATGAGCAGCACCAGAACCTCCACACCGGACAGAAGCCGTTCGTCTGCAACATATGTGGCGTCGCCTTCCCTCTGGCCAGATATCTACAAACTCACAAGAGCTCCTTGCATCCGCAGTCGTCAAGCTTGAAACGGTACCAATGTGTCCACTGTGACGAAAAGTGCGACAGTACCAAAAGTCTCACTATACATTTGCAGAAACATGGTATAATCAGAGAACCTAATTGTCTTTGTGACTTTTGTGGCAAGATTGTAGCGTCCGCTTCACAGCTGCAGTACCATCATAGGATGCACTCGGGAGTGAAGCCATACTCATGCACTATATGCAAAAAGAAGTTTGCGAAGAAGTACAACGTGCAACTTCACATGTGTATCCATACTGGTGATAAGTCGCACACTTGCGTTCATTGCGGCAAGCAGTACTCGCAGCGAAGCACTCTGCGGAGACATCTCAAAATaaacctATCCTTTAAGGCTGCGGTCACGAAGTCAGCGGGCGCggggcggtggcggcggcggcgcggcgcgttCCAATGCATAGATTTATATGGAACTGGCCACGAAGGCCGCGGCGCGGGGGCGGCGTACGAGCAGTGA
Protein Sequence: MENICRFCLKVSIKNMCSLQECDILYSIQKFLTIEIPAEDSFPSNLCKECFKEISQIIKFCITLKDNEDKLQYYSINGLLEDYYSEITNNQQIKHKQKELKKETPYFEKVENKTNTNFGDYDHLKNDEFSDDINDSHCSSDRYILKVENNTNTNSGDYDHLKNEEFSDDINDSHCSSDRYILKVENNTNTNSGDYDHLKNEELSDHINDSLCSSDDEITLSSIKKENELNSTAPLKNITKFIPIKSLIPKRKKKKEPENPEYVKPFTCLTCLIECHSQADLSNHYYANHVMKKNEDKYYTEHKSEDKTTYSCNSCVKTCKSKKDIVKHITSHTDDEKDERPLICKLCARTYRRVPDIVRHARAHNGIKLQCPYNCGYTTAYAGAMKEHKSRHLDEYKYTCETCGKGFNTKTWYEQHQNLHTGQKPFVCNICGVAFPLARYLQTHKSSLHPQSSSLKRYQCVHCDEKCDSTKSLTIHLQKHGIIREPNCLCDFCGKIVASASQLQYHHRMHSGVKPYSCTICKKKFAKKYNVQLHMCIHTGDKSHTCVHCGKQYSQRSTLRRHLKINLSFKAAVTKSAGAGRWRRRRGAFQCIDLYGTGHEGRGAGAAYEQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -