Basic Information

Insect: Apamea crenata
Gene Symbol: -
Assembly: GCA_949629185.1
Location: OX451380.1:7381375-7389143[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.041 3.7 9.2 0.9 1 23 382 404 382 404 0.97

2 9 2.7e-06 0.00024 22.3 0.9 1 23 451 474 451 474 0.97

3 9 6.7e-05 0.0061 17.9 0.3 2 23 480 501 480 501 0.97

4 9 2.5e-05 0.0022 19.3 3.5 1 23 509 531 509 531 0.97

5 9 5.2e-06 0.00047 21.4 1.3 1 23 536 558 536 558 0.96

6 9 3.2e-06 0.00029 22.1 1.4 1 23 567 589 567 589 0.99

7 9 5.2e-07 4.7e-05 24.6 1.0 1 23 595 618 595 618 0.98

8 9 0.27 25 6.6 0.9 1 14 624 637 624 647 0.79

9 9 5.4 4.9e+02 2.5 4.3 1 23 655 678 655 678 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.041	3.7	9.2	0.9	1	23	382	404	382	404	0.97
2	9	2.7e-06	0.00024	22.3	0.9	1	23	451	474	451	474	0.97
3	9	6.7e-05	0.0061	17.9	0.3	2	23	480	501	480	501	0.97
4	9	2.5e-05	0.0022	19.3	3.5	1	23	509	531	509	531	0.97
5	9	5.2e-06	0.00047	21.4	1.3	1	23	536	558	536	558	0.96
6	9	3.2e-06	0.00029	22.1	1.4	1	23	567	589	567	589	0.99
7	9	5.2e-07	4.7e-05	24.6	1.0	1	23	595	618	595	618	0.98
8	9	0.27	25	6.6	0.9	1	14	624	637	624	647	0.79
9	9	5.4	4.9e+02	2.5	4.3	1	23	655	678	655	678	0.94

Sequence Information

Coding Sequence: ATGTTGCACAACACAGGGCATTATGGTCCGAACGAGGCGCCAATTAACATGGGAACGCCCGTTAATATGACACCAATGGGTGGTCATATGAATATCACTCATAACATTAACAATTTGAGCAAAATAGCCCACCAAGGCGTCCCAGCGCCTAGCGGTCACTACAACCTACCGGACTATGCACATTACAACCACTCTCCAATAGGTATGCCGCCACAAATGGGTCAATTCCCCAGCTATCAACAATTGGGTTTCCAGCAATCATATATGAATCAAAATGCAACGAACGATTTACCATTCCCAAACGGTATGTTTCCTatgaatttgaatatacagaACGAGCATAACGCTAATATGATGAATTATGCTTATGATAAGAGAGTAATTGAGTCGGCAAGGCAGGAAAACTTTAAAGACCAAAATATGCGAAAAATGCCTTTGAATATACCTCAAATACCAAATAAACTGTACAACAAACAAATTGGCGGGAACAGCGACTTCTTACACAACAATATGTATGAAGAAACTCAACATAATCTAGATTTAAGCATTAAAACTCAAGAAAAACTCCAAATAAACAGCACTAGACGGAAAAACATTGAAAACACCGTCAAATTAATTGAAGATATTCTAATTCACTCGTCCAATAAACCTAAAGAAGTACCAGAAATTATTCCTATGGTACCAAACACTGCAAAACTGGACTTACCATCAGATATGACTGttgaaaatgttacaaaaacagCAAACATCCCGGAGTCAAATACTGATCCACTAGCAGAATCTCCACCACACGTAACAATTGACAGCACAAACAAGGCCAATGATGAACCGAAACCAACGGACACTGACAGTAGAGACAAACGAAAAGCAGAAAATGAAATTTCATCAGAAGATGAAGAGTTAAAACCTATAGGAATAACACAACACTTCATTAGAGAGGAAGCTGAAGTGACAACCGACAATAGTATTGTTATAAAGGTTGAGAAAGCTAGTTGGGCAGACTCAGAATGTTATACTCCATTCTTAAAAGACTGTCATGGGTTTGAGAGAGACGAACATATGAATTATAGAATTATTGAAGGCGACTGTAGTGTTGATGAAGCTGTTACTGCTTATAAAAATGACATAAAACCAGAAGGAGTATTCGAATGCCCGCACTGCGCACTTCTCTTCAAAGACCCAAAAAGATTTGTAATCCACTATAAATGGCATACATTCGGCCTAACGAACATTAAAAGAATGGAGATCGCAAAAGTAAGAGAACAACAGAGGTTTGAACGAAAAGAGGCGAAAATTATAGAGCGAATGAACTCTAAAGATGTGACGGATACTAAGGTGGACGGAAAGGTGTTTCCGTGTAAGGATTGTGATAAGGTGTTCAGTGCTAAGGGGAGCTTGAAGAATCACAGGCAAAGAACACATCCCACCCGCATAAGAGAGTGTAAAATCTGTCACAAAGTAATATCAAGCTGGACGGCCCTTCGAGCGCACTTAGCGACTCACTCGGCGGACTcagggctcggcttccagtgtagCGACTGTCCTAAGAGATTCAAGTACTCACACTCGCTGGCCAAGCACTCCGATACTCACTTGgaaaaggtCCACGCATGCCAGGACTGCCCCAAAAAGTTCGGTTCACAAGCTCTCCTGAAAATGCACATGAAGACCCACGAGCGAATGTTGCGCGGCGCCACTTATCGGTGTACTTACTGCGGGAAAGGGTTCTTTGAGTCGTATAGTTTACAGGTGCATGAAAGAACACATCGTAACGAGAGACCGTACACGTGTGACATCTGCAACACAAGCTTCGGAACTAACTCTAGTCTGAAGAGACATTTGAAAGTGTCGCACAACACAGCGAAGCCCCATCAGTGTACTGTTTGCCGGCGCAACTTCTCAACGGAATCCATCAGGGACAGGCACGAGCTGAGGCTCCACGGGAACCCCGAGGACTTCAAGTTTCCATGCAAACAGTGTTCTTGCAAatatttaaaactaaaagatCTTCAAAAACACGTCTACAAAATGCACCCCAAAGGCAAAAGGAAGAAAAAGGCGCAAGTAAGCGAAGCAAGCGATTCGGAATAG
Protein Sequence: MLHNTGHYGPNEAPINMGTPVNMTPMGGHMNITHNINNLSKIAHQGVPAPSGHYNLPDYAHYNHSPIGMPPQMGQFPSYQQLGFQQSYMNQNATNDLPFPNGMFPMNLNIQNEHNANMMNYAYDKRVIESARQENFKDQNMRKMPLNIPQIPNKLYNKQIGGNSDFLHNNMYEETQHNLDLSIKTQEKLQINSTRRKNIENTVKLIEDILIHSSNKPKEVPEIIPMVPNTAKLDLPSDMTVENVTKTANIPESNTDPLAESPPHVTIDSTNKANDEPKPTDTDSRDKRKAENEISSEDEELKPIGITQHFIREEAEVTTDNSIVIKVEKASWADSECYTPFLKDCHGFERDEHMNYRIIEGDCSVDEAVTAYKNDIKPEGVFECPHCALLFKDPKRFVIHYKWHTFGLTNIKRMEIAKVREQQRFERKEAKIIERMNSKDVTDTKVDGKVFPCKDCDKVFSAKGSLKNHRQRTHPTRIRECKICHKVISSWTALRAHLATHSADSGLGFQCSDCPKRFKYSHSLAKHSDTHLEKVHACQDCPKKFGSQALLKMHMKTHERMLRGATYRCTYCGKGFFESYSLQVHERTHRNERPYTCDICNTSFGTNSSLKRHLKVSHNTAKPHQCTVCRRNFSTESIRDRHELRLHGNPEDFKFPCKQCSCKYLKLKDLQKHVYKMHPKGKRKKKAQVSEASDSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00071769;
90% Identity: iTF_00746099;
80% Identity: -