Acre030137.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451378.1:2855434-2859416[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0029 0.26 12.8 5.9 1 23 151 174 151 174 0.97 2 17 0.00038 0.034 15.6 0.5 1 23 183 206 183 206 0.97 3 17 0.016 1.4 10.5 0.4 2 23 219 241 219 241 0.97 4 17 0.00042 0.038 15.4 1.4 1 23 250 273 250 273 0.97 5 17 0.00035 0.032 15.7 2.9 1 23 285 308 285 309 0.96 6 17 0.00016 0.014 16.8 0.7 2 23 337 359 336 359 0.97 7 17 0.0015 0.14 13.6 1.2 2 23 369 391 368 391 0.96 8 17 0.089 8.1 8.1 1.2 3 19 397 413 395 416 0.92 9 17 0.00067 0.06 14.8 0.5 2 21 421 440 420 443 0.94 10 17 0.42 38 6.0 2.2 3 23 453 474 452 474 0.93 11 17 0.00031 0.028 15.9 3.5 1 23 479 502 479 502 0.94 12 17 0.00054 0.049 15.1 2.1 2 23 514 536 513 536 0.96 13 17 0.19 18 7.0 0.4 1 23 563 586 563 586 0.92 14 17 0.57 52 5.6 0.1 2 23 593 614 592 614 0.91 15 17 0.17 16 7.2 1.7 2 23 620 641 619 641 0.97 16 17 0.022 2 10.0 0.1 1 23 707 729 707 729 0.97 17 17 0.094 8.5 8.0 1.9 1 23 735 758 735 758 0.97
Sequence Information
- Coding Sequence
- aTGGATCTAGAAGTGAAGGTTAAAACAGAAAAAGTTGAAAGAACAAGAAAAGATCCGACCTCATTTTTGCCCGATGAGCCAATGTCTTATGAGattaagaagaaaaagaagaagaaaaaaaagaagcaaGAAGACCCGTTTAAAGATATTGATGACAAAATGAGTGTTAAGATTGAACCAATAACTCTGCTGGACCCAGAGGTTAAAATAAAGGTTGAGGATATAGAAGTGGAATTGGATTTTAACGATTTTGGAGACAACGGCCTGATTCACGAAGGTAACGACGACAGTCAAGAACCAGCCGTGAAAATAGAGCCACAAAACCACGACGCTGTCATCCTTACATTCGAGAGCGTTATCAACGAGAAGAAACCACCGCTTGTCGCCGACACCAACGAAATGTTTCAAATTTCAAAGAATGAGCTAGTGCCAACCAAACAGGCTCCAAACCACGTCTGCAAAGTCTGCCATCTAGTCTTTCAATCACAGAAAACTCTACGAATGCATCAGAAACGAAAACATAAATCCTTTAGAAAGTCCTTCAAACACGTTTGTGATTACTGTGGCATGGCCTACGAAATGAAGAACAGTTTAGTTGCTCATATTAAGAGGAAGCACGGACCTGACGCAAGTCCTGATGATAGAGAGGAACGGACTTGTGAAATATGTGCGTTGGTCTTCAAAGGAATGGCTCGGTTACGCATGCATATGAGGAGGAAACATGGCTCCTTCCAGGATTCTTTTAAACACGTTTGTAAAGACTGCGGTTTAACTTATGACAAGTACAGAAGTTTGATTGTCCATATACAGCGAAAACATTCAAATAATCAGAAACCTGAAATCAATCAATGGTACAACTGTCCATTCTGTCctaaaatatttactaaaagAGAAACGTATGCTAGGCATGTGCAGAGGAAGCATCACATGTCAGACGAGAGCATAAAACAAGAAAAGAATGCTGAAGATTATTTGGAGAATTGCAAGAATGAAGAAACTGGTGAAATTACTTGTAAAGAATGCCCTCTAGTCTTTTCTTCTATTAATTTCTTAAAACTTCATATGAGACGGAAGCACAATGCGTTGAGAGAAGATTTCAGATTGAAGTGTCGGATCTGTAACTTGTCTTACGATAAAATCGAGAGTCTGAAGAGGCATGTGAGAAGAAAACACGACAAAGGTTCTCATTGCGAAGTTTGTAATAAACAATTTGACACGCGAGAGATGTATCTCAACCATTCTCACGTGAAAGCTATCAAGGAGTGCAATATTTGTGGACTCATCTTCGCGTCACAAGGTGGCTTAGCGAAGCATTTGAGGTGCACTCACAAAATAGATTCACCTAAAACAGTCTTCTGCAATCTATGCAACGAAGGTTTCCACGACAAGCGACAGTTAAAACCGCATTTTATGAAAGTGCATTTAAAAGTATCGTACACTTGTCGATATTGCAAAAAGGTTTTTAAGGCGAAAGAAAGTTATCGGCGACACATATTATTTAAGCACCCTAATTCTAATCATGTTAACGTTCATATGCAAAAATGTGAACAATGTAGTGCGACTTTTAAGGACGAATTTGATCTTTGTCGTCATATAAATATCTTTCATGGCCGCCCTGAAGATATGACGAAAGAGGACAAAGAAatgatagaaataaaaaaagaagatcAAGATATTAAGGACTGTTTCCAGTGCACCAAGTGCCCAGATACATATTTAACATGGGAACAGTTGAAATTACACTACGAAGCAACGCATCACAATATAGAAGAAACACAATGTCAGATATGTGGGGAGATACTCCCAGGGAACGAATtacaaaaacacataaaaagtCTTCACACGGACACTGAAATGCAGTGCAAATACTGTGAATTTAAGACGAATATTAGAGTAAGTTTGACGCAGCACACGTTAAGGCATAAAAATGCTGAGACAATTCACTGTGAATACACTGGCTGCAAGTATAAAACGTTCTACGATGGTGCTATGGAGAAGCATAAAAGAAAACATGCTGATTTGGGAGTCAAACTCCAATGTACGCAATGCCCGTTCCAGTCAATGAATAAATACATCTTGAAATATCATGAGGAAGCTCATGAGACAGGGAAAAAACGGTACATGTGTGATCAATGTGACTACGCAACGATTTTACCAGCTAATCTTGTACAGCATAAATATAAGCATTCTACAGTAAAGAGGTTTAAATGTGAAGTGTGTCCGTTTGCGACGAAATACAATACATCACTGAGGTTCCATGTTAGGAAAAAACACTGTGATCTACCGACATTCAgttaa
- Protein Sequence
- MDLEVKVKTEKVERTRKDPTSFLPDEPMSYEIKKKKKKKKKKQEDPFKDIDDKMSVKIEPITLLDPEVKIKVEDIEVELDFNDFGDNGLIHEGNDDSQEPAVKIEPQNHDAVILTFESVINEKKPPLVADTNEMFQISKNELVPTKQAPNHVCKVCHLVFQSQKTLRMHQKRKHKSFRKSFKHVCDYCGMAYEMKNSLVAHIKRKHGPDASPDDREERTCEICALVFKGMARLRMHMRRKHGSFQDSFKHVCKDCGLTYDKYRSLIVHIQRKHSNNQKPEINQWYNCPFCPKIFTKRETYARHVQRKHHMSDESIKQEKNAEDYLENCKNEETGEITCKECPLVFSSINFLKLHMRRKHNALREDFRLKCRICNLSYDKIESLKRHVRRKHDKGSHCEVCNKQFDTREMYLNHSHVKAIKECNICGLIFASQGGLAKHLRCTHKIDSPKTVFCNLCNEGFHDKRQLKPHFMKVHLKVSYTCRYCKKVFKAKESYRRHILFKHPNSNHVNVHMQKCEQCSATFKDEFDLCRHINIFHGRPEDMTKEDKEMIEIKKEDQDIKDCFQCTKCPDTYLTWEQLKLHYEATHHNIEETQCQICGEILPGNELQKHIKSLHTDTEMQCKYCEFKTNIRVSLTQHTLRHKNAETIHCEYTGCKYKTFYDGAMEKHKRKHADLGVKLQCTQCPFQSMNKYILKYHEEAHETGKKRYMCDQCDYATILPANLVQHKYKHSTVKRFKCEVCPFATKYNTSLRFHVRKKHCDLPTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327297;
- 90% Identity
- iTF_00974040;
- 80% Identity
- -