Acre032217.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451381.1:5302555-5312239[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.032 2.9 9.5 0.4 1 22 49 70 49 72 0.90 2 18 3.3 3e+02 3.2 0.6 5 23 147 166 144 166 0.90 3 18 0.0046 0.42 12.1 1.4 3 23 172 193 171 193 0.96 4 18 6.5e-05 0.0059 18.0 2.4 2 23 197 219 196 219 0.92 5 18 0.45 41 5.9 0.1 2 23 225 247 224 247 0.93 6 18 0.001 0.091 14.2 1.0 2 23 255 277 254 277 0.94 7 18 0.0083 0.75 11.4 3.9 2 23 284 305 283 305 0.92 8 18 0.001 0.092 14.2 0.7 1 16 311 326 311 328 0.93 9 18 0.36 32 6.2 2.6 1 23 368 391 368 391 0.95 10 18 6.8 6.2e+02 2.2 0.2 3 22 418 437 416 439 0.73 11 18 0.75 68 5.2 2.0 3 23 463 484 461 484 0.93 12 18 0.0031 0.28 12.7 0.2 1 23 490 513 490 513 0.94 13 18 0.0052 0.47 12.0 3.4 2 19 520 537 519 542 0.89 14 18 0.13 12 7.6 0.2 2 23 548 570 547 570 0.92 15 18 0.011 1 10.9 1.7 1 23 577 600 577 600 0.96 16 18 0.0017 0.15 13.5 0.3 3 23 608 628 607 628 0.94 17 18 4.3e-06 0.00039 21.7 0.4 1 23 634 656 634 656 0.98 18 18 0.00018 0.016 16.6 1.2 1 23 662 684 662 685 0.96
Sequence Information
- Coding Sequence
- ATGAATGAAACTGAACCGTCCAGCActgAACAATCATTGGAAACAAGACTTAATGAAAAGACTAGAAAAGAACAGCTCGCGACAATACTGACGGTCATTATTCACAACTCAACTATAGTACCGTTTAGATGGCACAGAAGCAAATACATGTGCTTCTACTGCAAGTCTGTGTTCGTCGAAAGCGCAGAGCTTAGAGAACACACGGATTTTGAACATAGAGTCATCAATACCCGGGAAGTCATTGTAAGAACACTGTATACGGGAGGCAGGGCAAAGCTCGACATCTCAAACCTCTGGTGCACCAACTGCGCAAGTCAATTCGATGATTTCCAAGAATATTTGGAGCATCTATCAGAAACTCATGACCTCAGTATAAACAAAGAAGCCTCCCAATCCTTTGACTGTTTCCATTTAGCTGACGACGGAATGTTCTGCATAGAATGTGGACAGTACTTCCGATTTTTCGGACCCTTACTCAAGCATACGTACAAGTATCACATCCAACAGATTCTTTGCGAAATCTGCGGACAAGGATTTTCCGAAAAACATAACGTGCACAACCATGTCAAACTAATTCATGGCATCAAGTCCTGTAAGCATTGCAATGAGACATTCCGTACGCAGTACGCTCTAAAGAATCACGTGGACAATGTTCATCGGACCGACAAGCTCCAATGTGCGATGTGCCCAGAGATTCTCGGAAACAGATACTTAAAGAAACGTCACATGGCCCTAGTTCATGACTGCAAGAGCGCGCAATTAGTCTGCGAATATTGTTCGAAGATTTTTaccagaaataataaatatgtccaGCATAAGCTTAGAGTACATGATAAGGAGAAGAATTGTACCTGTGAAATTTGTGGCTTCAAGACTTTTAACGAGGACTGTCTGAAGAGACATATGGTGGTTCATTACGATTTGCGGCCTTTCACGTGCGGAATTTGCAACAAGTCGTTTCGGAGGAAGAAGACGCTTGCGTATGAAGAAGATGAAGAGGCTCGGCTCGCTGAAAAGCAAAGAAAAGACGAGCTCACGAagttcatcaccatcattttaGAAAACTCCTCGATCGTCCCGTTCAGATGGGCAGCCAACAAGTACATGTGCTTCTACTGCTGTTACTCCTTCGTAGAGAGCGGGAAACTCAAGGAACATACCAATGAAGAACATAAAGGAGCAAACCTAAAGAATGTACTCAGAACCTTGGTTGGAAGCAGTCGCATTAAACTTGACACTTCAGAAATCTTTTGCACAATATGcggactacagttccttgtttTCAACGATTTCTTAGATCATCTAGACTCACTCCACGACTTCAAATTCAACAAGGAAATAGCCAATTCTATCTTCACTTTCCATCTGTCTGACGATATATTGTTCTGTCAGGAATGTGCTCAGGAGTTCCGGTTCTTCGGGACGCTATTGAAGCATGCTCACAAATACCATAACAAGTTTAGAACATTTCTGTGTGAGATGTGTGGACAAGGGTTCGTTGCTCACGCGAATATGGTCAGCCATATGAGGAACGTTCACACCTTCACTCAAGGCTTGAAATGTCGAAAATGTGACAAAGAATTCCGAAACACTTATTCCCTACAAGTTCACTGTGAAAAAGTACACAGAACCGACATGCTGAAATGCCCGAAGTGTCCAGAGATTCTCCCATCACAATACTTTAAAAAACGGCATTTAGCGCTTGTGCATGACGTCAAAAAACTGCAGTTCAAATGCGACCAATGCGATCTGCTATTTACAATGAAGAGCAGACTCGTTCAGCATAAGCTGAGGACTCATCTAAAACAGAAAACTGTCGCCTGTGAGGTATGTGGCTTCAAAGTCTTCAACAACGAACTTTTGAAACGCCACATGGTTCGCCACGATGACACGAGGCCTTTCGAGTGCGAAATTTGCGAAAAGGCGTTCCAGAGGAAGAAAACTTTGGATATACATATGAGGATACATACGAATGATAAGAGGTATGTTTGTAGGGAGTGTGATAGGGCTTTCGTTCAGATGACGAGTTTGAAGTTGCATGTGAAGTTACATCACGGAGGGGCCGGGGGTGCTGAAGATGCCGGAGGGTCGGAAGAGGCCTCTTGGCATTAA
- Protein Sequence
- MNETEPSSTEQSLETRLNEKTRKEQLATILTVIIHNSTIVPFRWHRSKYMCFYCKSVFVESAELREHTDFEHRVINTREVIVRTLYTGGRAKLDISNLWCTNCASQFDDFQEYLEHLSETHDLSINKEASQSFDCFHLADDGMFCIECGQYFRFFGPLLKHTYKYHIQQILCEICGQGFSEKHNVHNHVKLIHGIKSCKHCNETFRTQYALKNHVDNVHRTDKLQCAMCPEILGNRYLKKRHMALVHDCKSAQLVCEYCSKIFTRNNKYVQHKLRVHDKEKNCTCEICGFKTFNEDCLKRHMVVHYDLRPFTCGICNKSFRRKKTLAYEEDEEARLAEKQRKDELTKFITIILENSSIVPFRWAANKYMCFYCCYSFVESGKLKEHTNEEHKGANLKNVLRTLVGSSRIKLDTSEIFCTICGLQFLVFNDFLDHLDSLHDFKFNKEIANSIFTFHLSDDILFCQECAQEFRFFGTLLKHAHKYHNKFRTFLCEMCGQGFVAHANMVSHMRNVHTFTQGLKCRKCDKEFRNTYSLQVHCEKVHRTDMLKCPKCPEILPSQYFKKRHLALVHDVKKLQFKCDQCDLLFTMKSRLVQHKLRTHLKQKTVACEVCGFKVFNNELLKRHMVRHDDTRPFECEICEKAFQRKKTLDIHMRIHTNDKRYVCRECDRAFVQMTSLKLHVKLHHGGAGGAEDAGGSEEASWH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00039083;
- 90% Identity
- -
- 80% Identity
- -