Basic Information

Insect: Apamea crenata
Gene Symbol: -
Assembly: GCA_949629185.1
Location: OX451351.1:2743941-2754854[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00085 0.077 14.5 4.9 1 23 409 431 409 431 0.98

2 11 9.6e-05 0.0088 17.4 1.5 1 23 437 459 437 459 0.98

3 11 0.00011 0.01 17.2 1.7 1 23 465 488 465 488 0.96

4 11 0.047 4.3 9.0 3.3 1 21 494 514 494 516 0.95

5 11 0.0011 0.1 14.1 3.8 1 23 522 544 522 544 0.99

6 11 2.3e-05 0.002 19.4 5.3 1 23 550 572 550 572 0.98

7 11 0.0051 0.46 12.0 0.9 1 23 580 603 580 603 0.97

8 11 0.028 2.5 9.7 4.3 2 23 610 631 609 631 0.96

9 11 5e-05 0.0045 18.3 2.8 1 23 637 659 637 659 0.99

10 11 5.6e-06 0.00051 21.3 1.6 1 23 665 688 665 688 0.96

11 11 4.8e-05 0.0043 18.4 6.0 1 23 702 724 702 724 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00085	0.077	14.5	4.9	1	23	409	431	409	431	0.98
2	11	9.6e-05	0.0088	17.4	1.5	1	23	437	459	437	459	0.98
3	11	0.00011	0.01	17.2	1.7	1	23	465	488	465	488	0.96
4	11	0.047	4.3	9.0	3.3	1	21	494	514	494	516	0.95
5	11	0.0011	0.1	14.1	3.8	1	23	522	544	522	544	0.99
6	11	2.3e-05	0.002	19.4	5.3	1	23	550	572	550	572	0.98
7	11	0.0051	0.46	12.0	0.9	1	23	580	603	580	603	0.97
8	11	0.028	2.5	9.7	4.3	2	23	610	631	609	631	0.96
9	11	5e-05	0.0045	18.3	2.8	1	23	637	659	637	659	0.99
10	11	5.6e-06	0.00051	21.3	1.6	1	23	665	688	665	688	0.96
11	11	4.8e-05	0.0043	18.4	6.0	1	23	702	724	702	724	0.97

Sequence Information

Coding Sequence: ATGTCTGGAATTTGTTTGTTTCGAGATCTGCTCATTACTAGTCAGCCAGCCGGCACCTGGCCGCCAGGCCTACCTGTCCCTATTAAAGACGAGCCTCTGGAACTGTCGGCGGACCAGGAACACCTGGTAAGTGTCGACAGCGAGCAGTACTCAAACGCAGACCCAGACCTCATCACCTATAGCCAAGCTTTTTGGCACAACATCCAGACGAgcctgtcaatccctagcagtGGGCAGGACTCAAGCCCAGACCTTACCAACTACAATCAAGAGATTGGGAACGAGCCCGAAAGCCAGGCGAGCCTGACAAACCCACATAACGAGGAGGACTCACTCCCAGACCCCGTCATTCAGGGTGAAGTTTTTTGGAACGAGCCCGTGAGCCAGGCGAGCCTGGAAAGTCCAGACAGCGTGGCAGGCCCAAACAAGAACACAAAATCTACGAAACCTTATTTGGTAATTACCCCTCAGGGGGAGATAGTTGAAGAGAACGCACCCATCAAGAAGAACATTCATATAAAAGAGAATATCTTGATTGCTCCGATTAAGAAAATCATCATTGAAGAATCGGAGGAAAGCCAAGACTCCCTGGCTAGTCAAGAGACAGTAATTGTAGAAGACGAGGTAAGCCAGGACAGCCTGGCTAGTCAAGATTGCGCGGAAAAAGACAACCTGAAAGAAGATAAAAAAAGCTTCACAGAAAAACCAACCATGCCACTTCCAGATAAAAACGAGAAGAGCAAGCAAACATACCAAGGATCGGTCATCGCAGTAAATGCCGCAACTGATGAAGAAGGCTTGCCCGCGGGGATGGTCGAGTACTACGTAGACCAAGACGGCAAGTACTACTACCAGTCAGCAGTCGAAGGAGAGGACGTAGACATGGATAATTCCGAAGACAACCAAGAAATTGAGGAGGCGGTCGCTGAAGGGTCGGAACCGACGCTGACCGATCAGGAGGAAACTTATCAGACGGTCACGTTGGTCCCTTCTGAGACCAACGGGGAGGTTAGCTACGTGCTGGTGGTGCAAGACGAGGCCAAGGGGGTCGTCAACATCGATCTGAAGATGGACCAGTCCGAAGCGGAGGAGAAAGGCAACGATGACGTGTACACCTTCGAGGACGAGGAGGCCGgcgaggaggaggaggaggaggaggaggagatTCCCGATGGCAGGCCCAAGACCACGCAGAAGCGCAGCCTCGCGCACATGCGTCCTAACTACAACTGCAACTTCTGCGACTACACCAGTCATCGCAGGTACCTTCTGCTGCGCCACATGAGGTCGCACTCGGAGGACCGTCCGCACAAGTGTACCGTGTGCGAGCGCGGTTTCAAGACCATGGCTTCGCTGCAGAACCACGTCAACATGCACAACGGCATCAAGCCGCACGTCTGCAAGTACTGCAACAGCCCTTTTACCACCTCGGGCGAGCTGGTCCGCCACGTACGCTACAAGCACACCCACGAGAAGCCGCATAAGTGCACAGAGTGCGACTACGCCTCCGTCGAGCTGTCCAAGCTGCGCCGCCATGTCCGCTGCCACACTGGCGAGAGACCCTACCAGTGCCAGCACTGCACCTACGCATCCCCGGATACGTTCAAGCTGAAGCGCCACCTGCGCACCCATACCGGCGAGAAGCCCTACAAGTGTGAGCACTGCAACATGTGTTTCACACAGTCAAACTCGCTGAAGGCTCACCGGCTCATCCATAATGTATCCGAGAAGCCGGTGTACTCGTGCGAGCTGTGCCCGGCCAAGTGTGGCCGTAAGACGGACCTGCGCATCCACGTGCAGAAGCTGCACACTTCTGACAAGCCGCTGAAGTGCCGCCGCTGTGGCAAGTCCTTCCCCGATCGCTACTCCTGCAAGGTCCACAACAAGACCCACGAGGGAGAGAAGTGCTACAAGTGCGACCTGTGCCCATACGCGTCGACCACGCAGCGCCATCTCAAGACGCACATGCTGAAGCACACCGATGAGAAGCCGTTCGTCTGCGACCTGTGCGATCAATCATTCAGGCAGAAGCAGCTGCTCCGTCGCCACCAGAACTTGTACCACAACCCGAACTACGTGCCCAAGCCGCCGAAGGAGAAGACGCACTCTTGCCACGAGTGCCACCGCATGTTCGCCCACAAGGGCAACCTGATCCGCCACTTGGCCGTGCACGACCCGGAGTCTGGACACCACGAGCGCGCGCTCGCCCTCAAGATCGGGCGCCAGAGGAAGGTGCGATTCGTCGAGGGAGAGCCTATGCCTAACCTTCGCGTCCTGGACTCTGCCGACGCTGAGAACATGATTAAGCTGGGTCTCACCAAGAACGACCTGAAGCGTGGCGAGCTCGTGACTGTGGGCGACGGCGACGGCCAGCAGTACGTGGTGCTGGAGGTCATTCAACTGGAGGACGGCACTGAGCAGCAAGTTGCCGTCGTGGCTCCGGAATACAACATGGATGAGGATGAAGCCGGTGAGTTACATTTAAATACAGGGTTAAACTAA
Protein Sequence: MSGICLFRDLLITSQPAGTWPPGLPVPIKDEPLELSADQEHLVSVDSEQYSNADPDLITYSQAFWHNIQTSLSIPSSGQDSSPDLTNYNQEIGNEPESQASLTNPHNEEDSLPDPVIQGEVFWNEPVSQASLESPDSVAGPNKNTKSTKPYLVITPQGEIVEENAPIKKNIHIKENILIAPIKKIIIEESEESQDSLASQETVIVEDEVSQDSLASQDCAEKDNLKEDKKSFTEKPTMPLPDKNEKSKQTYQGSVIAVNAATDEEGLPAGMVEYYVDQDGKYYYQSAVEGEDVDMDNSEDNQEIEEAVAEGSEPTLTDQEETYQTVTLVPSETNGEVSYVLVVQDEAKGVVNIDLKMDQSEAEEKGNDDVYTFEDEEAGEEEEEEEEEIPDGRPKTTQKRSLAHMRPNYNCNFCDYTSHRRYLLLRHMRSHSEDRPHKCTVCERGFKTMASLQNHVNMHNGIKPHVCKYCNSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHVRCHTGERPYQCQHCTYASPDTFKLKRHLRTHTGEKPYKCEHCNMCFTQSNSLKAHRLIHNVSEKPVYSCELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKSFPDRYSCKVHNKTHEGEKCYKCDLCPYASTTQRHLKTHMLKHTDEKPFVCDLCDQSFRQKQLLRRHQNLYHNPNYVPKPPKEKTHSCHECHRMFAHKGNLIRHLAVHDPESGHHERALALKIGRQRKVRFVEGEPMPNLRVLDSADAENMIKLGLTKNDLKRGELVTVGDGDGQQYVVLEVIQLEDGTEQQVAVVAPEYNMDEDEAGELHLNTGLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00123629;
90% Identity: iTF_00123629;
80% Identity: -