Acre023268.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451369.1:18121992-18125188[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5 8.7e+02 0.7 0.2 24 32 41 49 41 50 0.92 2 2 6e-09 3.5e-06 27.6 0.0 11 37 184 211 177 214 0.86
Sequence Information
- Coding Sequence
- ATGCACAATCAAACAGCACCAGATTGTATCCAGCATTTGATCATCACTCAACAACGAACAACTTCATGCAATCCTAAGACAGTATCCCTGAAGAAACCTGCTTATGAAGAGCTCGATGACAGACACTACGGTATCAGCTTTCCCACGCCTACGAAAGTGCATTTATCCTGTGGACGTGACCTGTATGACACCTTAAAAGGCAGCTACCTCGCTATAATACCCCAGAGATGCTCTCTTGAAACACCGCACTTTAAGATCTACAACTTCAAAGACCGCCTCAAGGGACAAGCGTTGAAAATCATCGATATCCCAGCCGATAATTTGACTTTTTGGCAGCAGACGACATCTTCAGCCCCAATCTTTAAGTTAAACTCAATCAAGTTGGACCATTTACACGAGACTAGTAGGAAGTTGTCCATGCAGTCACCAATTACCCTCATTGAAGACAGTAACTCCAGCGTATATCACACCACTATACCGATTTTCACCATGTCTTCAAGATTGAATAGAAAAACATGGGATAGCAAATCCATGAAAATCGCCTACCTAGCtgtgaaaaacaaagaaatggGGTATCATAAGGCTTCGAAGTTATATAGTGTTCCCAAAAGCACTTTAGAAGACTATGTTAAGAGTCCTAAGGATATAGATGAGCTCTTGGCAACTAAATTAGGCAGAAAACCTACATTTGACAAGGGAATAGAAGAAGAATTATTTGAATACTGCCTTGAGATTGTTAAAAAAGTACTATGGGCTTCGGGCAAATGA
- Protein Sequence
- MHNQTAPDCIQHLIITQQRTTSCNPKTVSLKKPAYEELDDRHYGISFPTPTKVHLSCGRDLYDTLKGSYLAIIPQRCSLETPHFKIYNFKDRLKGQALKIIDIPADNLTFWQQTTSSAPIFKLNSIKLDHLHETSRKLSMQSPITLIEDSNSSVYHTTIPIFTMSSRLNRKTWDSKSMKIAYLAVKNKEMGYHKASKLYSVPKSTLEDYVKSPKDIDELLATKLGRKPTFDKGIEEELFEYCLEIVKKVLWASGK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -