Basic Information

Insect: Apamea anceps
Gene Symbol: RREB1
Assembly: GCA_951799955.1
Location: OX637529.1:5234619-5252356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0021 0.17 13.2 0.8 1 23 146 168 146 168 0.98

2 11 0.00095 0.08 14.3 1.2 1 23 175 197 175 197 0.97

3 11 3.3 2.8e+02 3.1 3.1 1 23 201 223 201 223 0.90

4 11 0.0029 0.25 12.7 1.4 1 23 228 251 228 251 0.98

5 11 0.037 3.1 9.3 0.2 2 23 256 278 255 278 0.92

6 11 0.0051 0.43 12.0 0.1 3 21 292 310 292 311 0.95

7 11 1.4 1.2e+02 4.3 0.1 3 23 360 381 358 381 0.95

8 11 0.0055 0.46 11.9 0.1 2 19 397 414 396 418 0.92

9 11 9.8e-06 0.00083 20.5 1.0 1 23 424 446 424 446 0.99

10 11 6.3e-07 5.3e-05 24.3 2.5 1 23 453 475 453 475 0.97

11 11 0.00013 0.011 16.9 3.8 1 23 481 504 481 504 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0021	0.17	13.2	0.8	1	23	146	168	146	168	0.98
2	11	0.00095	0.08	14.3	1.2	1	23	175	197	175	197	0.97
3	11	3.3	2.8e+02	3.1	3.1	1	23	201	223	201	223	0.90
4	11	0.0029	0.25	12.7	1.4	1	23	228	251	228	251	0.98
5	11	0.037	3.1	9.3	0.2	2	23	256	278	255	278	0.92
6	11	0.0051	0.43	12.0	0.1	3	21	292	310	292	311	0.95
7	11	1.4	1.2e+02	4.3	0.1	3	23	360	381	358	381	0.95
8	11	0.0055	0.46	11.9	0.1	2	19	397	414	396	418	0.92
9	11	9.8e-06	0.00083	20.5	1.0	1	23	424	446	424	446	0.99
10	11	6.3e-07	5.3e-05	24.3	2.5	1	23	453	475	453	475	0.97
11	11	0.00013	0.011	16.9	3.8	1	23	481	504	481	504	0.93

Sequence Information

Coding Sequence: ATGCAACCCCTCGATGAGTGCATAGGCACTACGGTAGCCGCACCAAACCTTCAGACGAGAACATTCCAATCCGATCACGCAGACTATCATTTTGTCCACTGCAGCGATCACGAAACCAACCCCAGCCCCAGTGCCAAGGAGAATAAAGCACAAGAAATTCAACAGATTACTTTACCAAACTTAGATTTAGGAGATGATGACACACTGACATTTAACGATATAGATTCTAGCGAcgataataatatacaaaaaaaagaaaaaatgacgaaaaaagttaaaaagaaagataaaaaagtaataaagaaaGATGGACGTTGCAAGCCAGCGAATGAAGTATTgaataatgatatttttaatattaaggaTTTGAATCAGGAAGAACAAATGTACGAGGTTCATAAAAGACAGTTGTCTACTAATTACAAGAATTCTGGGTTTAAGTGTAATGAATGTTTTAAAGGGTTTTTAGATAAAGATGCTTATAAAGGACATATGATAAGGCATACGGATCAATGTGGAATATACAGCTGTGCTATATGCAAAATCCGCTTCAAGAAGTTACAAGCGCTCAGAAACCATACAACCAGTCATATGCAGAAGTTTTCTTGTAAGAGATGTAATTATGTGACCTTTAGGAGACATGCAGCTAAACTACACGAGGATTATCACAATGGCACTAAATATGTTTGTCCACATTGTATGGAGAATTTCGACAAACTATCAACCTATATGAGTCATATCCGCATAAAGCACCCGTCAGACATAGTGTGCCAGTTGTGTGGCTACTCCTTCGTTAGCGACAAGGGACTAGGCCTCCATAAGAAGCTGAAACACCGGTTTGATGATCACCAAGTCCCTGCAGACGGTCCGTGGTGCACCAAATGTAATTTACAATTTATAAGTAAGGGGGCTTTAGAACGACATGTGCAGTTATCAACTAAACACAGCGATGAAATTAAAACCAGCAAACCACATGCCCGTCGTAACTATAAGGATCACGAAAGCAGTAAGATTCACAACAACGATACGGAAGGGAAGAAGAAACGGAATACATACAGGCCTGAGGGACCAATAGCTTGTGAACAGTGTGAAATGCAACTCCCAGACCCTCTGTCATACTACAGGCACTTCAGACGAATGCACCCGGACAAGAATCGGACCAACTACCCTTCTATGAAGTCCAAGAGCATGTGCGAAGTGTGCGGGAAAATGTTTCAGAGCCTAGCCCTCTTACAAGACCACAGTTGGACCCACACAGACTCCAAGCAATTTAAATGCTCAGCCTGTGACAAGCAATTTGTTCGGAAGTACAGGCTTATTGCTCATCAGCGCGTGCACGGAGCTACAAGGGGCAATCACACCTGCAATGTCTGTTCCAAGAGCTTCACTACTGCAAGCAATATGCAGAGGCATATGGTGAGTCATACCGGTCTTAAACCGTTCAAATGTGAGGTCTGTGGGAAATGCTTCAAGCACGCGAGTGAGAAACGTGTCCACGTCACTTACGTACATCTTAAGAAGCCGTGGCCGAAGCGCGCTAGGGGGAAGAGGAAGGAAAGTAGACAGAATGACGCACAAACCACGCCGATGCCTGCAACAGACATTCAACCCGAGCACATAGATATAAGCATAGTAAATAAACCaatgtattataatattaaaatgtaa
Protein Sequence: MQPLDECIGTTVAAPNLQTRTFQSDHADYHFVHCSDHETNPSPSAKENKAQEIQQITLPNLDLGDDDTLTFNDIDSSDDNNIQKKEKMTKKVKKKDKKVIKKDGRCKPANEVLNNDIFNIKDLNQEEQMYEVHKRQLSTNYKNSGFKCNECFKGFLDKDAYKGHMIRHTDQCGIYSCAICKIRFKKLQALRNHTTSHMQKFSCKRCNYVTFRRHAAKLHEDYHNGTKYVCPHCMENFDKLSTYMSHIRIKHPSDIVCQLCGYSFVSDKGLGLHKKLKHRFDDHQVPADGPWCTKCNLQFISKGALERHVQLSTKHSDEIKTSKPHARRNYKDHESSKIHNNDTEGKKKRNTYRPEGPIACEQCEMQLPDPLSYYRHFRRMHPDKNRTNYPSMKSKSMCEVCGKMFQSLALLQDHSWTHTDSKQFKCSACDKQFVRKYRLIAHQRVHGATRGNHTCNVCSKSFTTASNMQRHMVSHTGLKPFKCEVCGKCFKHASEKRVHVTYVHLKKPWPKRARGKRKESRQNDAQTTPMPATDIQPEHIDISIVNKPMYYNIKM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00122714;
90% Identity: iTF_00124576;
80% Identity: -