Basic Information

Insect: Apamea anceps
Gene Symbol: -
Assembly: GCA_951799955.1
Location: OX637530.1:4402429-4405223[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.03 2.5 9.6 3.1 1 23 9 32 9 32 0.98

2 14 0.00094 0.08 14.3 0.7 2 23 39 61 38 61 0.95

3 14 0.03 2.5 9.5 3.1 2 23 68 89 68 89 0.97

4 14 1.5e-05 0.0013 19.9 1.4 1 20 95 114 95 116 0.94

5 14 0.00032 0.027 15.7 3.5 1 23 155 178 155 178 0.98

6 14 0.22 19 6.8 0.6 2 23 204 225 203 225 0.96

7 14 5.7 4.8e+02 2.4 0.2 2 23 247 269 246 269 0.86

8 14 0.0016 0.14 13.5 0.4 1 23 274 297 274 297 0.91

9 14 0.0011 0.092 14.1 4.2 1 23 302 325 302 325 0.97

10 14 0.6 51 5.4 0.2 2 23 331 353 330 353 0.93

11 14 0.0016 0.13 13.6 0.8 1 23 360 383 360 383 0.98

12 14 0.0009 0.076 14.3 0.5 3 23 391 411 390 411 0.97

13 14 6.5e-06 0.00055 21.1 1.0 1 23 417 439 417 439 0.98

14 14 2.2e-06 0.00019 22.5 1.7 2 23 446 467 445 467 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.03	2.5	9.6	3.1	1	23	9	32	9	32	0.98
2	14	0.00094	0.08	14.3	0.7	2	23	39	61	38	61	0.95
3	14	0.03	2.5	9.5	3.1	2	23	68	89	68	89	0.97
4	14	1.5e-05	0.0013	19.9	1.4	1	20	95	114	95	116	0.94
5	14	0.00032	0.027	15.7	3.5	1	23	155	178	155	178	0.98
6	14	0.22	19	6.8	0.6	2	23	204	225	203	225	0.96
7	14	5.7	4.8e+02	2.4	0.2	2	23	247	269	246	269	0.86
8	14	0.0016	0.14	13.5	0.4	1	23	274	297	274	297	0.91
9	14	0.0011	0.092	14.1	4.2	1	23	302	325	302	325	0.97
10	14	0.6	51	5.4	0.2	2	23	331	353	330	353	0.93
11	14	0.0016	0.13	13.6	0.8	1	23	360	383	360	383	0.98
12	14	0.0009	0.076	14.3	0.5	3	23	391	411	390	411	0.97
13	14	6.5e-06	0.00055	21.1	1.0	1	23	417	439	417	439	0.98
14	14	2.2e-06	0.00019	22.5	1.7	2	23	446	467	445	467	0.96

Sequence Information

Coding Sequence: ATGCAGAAAGTGCATGGGAAGAAATACAAGTGTTTCAATTGTACAGAAGTTTTTGGATCACATTATAAGCGGTCCTTACACATGATGACGGTGCATAAAAATAGGGAGACAATCAAATGCCTCCAATGTCCGTTGACTTTTGTCTTCAGAAGTACAATGATGAGACACTTAAGAGAGTCACATCTACAAGAAAAGAATGCCACATGCCATATCTGCGGCTGGAAATGCTTTGAAGGGAGCAGACTTCAGATACACATGCTGAAGCATAGCACTGAAAAGAACTTTTACTGCAGTATATGCAACAAGGCCTTTAAAACGAAAAAGACTTTGAATCAACAtaCCGCGAAGGGAAACGACAACAGCAAGCCATGCCTAGACGAGGACACCCAAAGAACCTGCAAACTCTTTGTGGGCATTCTAGAAACATCTACGGCGATACCGTTTAGAATTAACAACAACGAATACAAGTGCTTCTACTGCCCAATAAGCTTTTGCCTACCATCGCGGCTGAGGAAACATACGCAAAGGATCCACGTGAACCAAGACCTGAAAGAAATTATCAagaaaaatatcacaaaatccattttaaatttGGACATCTCAGAGTTGCGATGCAAACTTTGTTACGACAACTTTGAGGATACTGACACTTTCGTCGCTCATCTTCAAAAACACAAATTGAAAGTAGATAACGATTTAACACACATTATAAGCTTCAAACTGTCCGATGACGTAATCAGTTGCTACGTTTGCAAAGATGAGTTTTTGTATCTCTCCTCTCTTCGCCAGCACACTCAAGGGGCCCATACGGACGGAAGATTCCCTTGTGAGActtgtaaaatttcattttacacTGAAATCAGTCTGATTAGGCACACAGACGAAAAACACAAGACGACCCAATTCGACTGTAACGTATGCGGCAAAAAACTGTGCTCGAATCGCAGCAAAAGACGCCACATAAGACGAATGCATGAAATAGAAAACAAGAAATGTCCCGTTTGCTTTAAAATACTCGGCAGTGCGTATCAAAAAAGCACTCATTTAGCCAAAGCTCATGATGTTTGGAAATCGCAATATAAATGTGATATGTGCCAAAGAATGTTTCTAAAGAAACCTTTGTTATCAGAGCATATACGACGAGAACATTTCAAGGAGAAAAACGTCGCTTGTGATGTGTGTGGCCAAAGATTCTTTGATCAGCATTTGCTTGACGCGCATCAAGTTAAACATGAGAAGAGCCGGCCTTTTGAATGCGTTTACTGTAGCAAAACATTTACAAGAAAGAAGGGTTTACTCATTCATGAGAGGATACATACGAATGATAGGCGGTGTGTGTGTAAGGAGTGTGGGAAAGCGTTCGTGCAGTATGCTAGTTTACACTGGCATATGAGGTGGCATCGCAAACAACAGGCTCAGGAGGAGACTGTGTCTACCGAAGAAACGGCCGTTGGAGCAAACGAGCAAGACTAA
Protein Sequence: MQKVHGKKYKCFNCTEVFGSHYKRSLHMMTVHKNRETIKCLQCPLTFVFRSTMMRHLRESHLQEKNATCHICGWKCFEGSRLQIHMLKHSTEKNFYCSICNKAFKTKKTLNQHTAKGNDNSKPCLDEDTQRTCKLFVGILETSTAIPFRINNNEYKCFYCPISFCLPSRLRKHTQRIHVNQDLKEIIKKNITKSILNLDISELRCKLCYDNFEDTDTFVAHLQKHKLKVDNDLTHIISFKLSDDVISCYVCKDEFLYLSSLRQHTQGAHTDGRFPCETCKISFYTEISLIRHTDEKHKTTQFDCNVCGKKLCSNRSKRRHIRRMHEIENKKCPVCFKILGSAYQKSTHLAKAHDVWKSQYKCDMCQRMFLKKPLLSEHIRREHFKEKNVACDVCGQRFFDQHLLDAHQVKHEKSRPFECVYCSKTFTRKKGLLIHERIHTNDRRCVCKECGKAFVQYASLHWHMRWHRKQQAQEETVSTEETAVGANEQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00123657;
90% Identity: iTF_00122757;
80% Identity: -